myRT

myRT report for GCA_001453515.1_WH-SGI-V-07650

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Seq: LLRV01000090.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig18, whole genome shotgun sequence (154100 bp)
Overview 1 RT 1: 110736-119424 bp Neighborhood of RT #1 [110736, 119468] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P SLC-NCS1sbd_CobB-like Feature: gene Location: 110736-112826 bp Feature: domain Description: HyuA Location: 110751-112806 bp Feature: domain Description: HyuA Location: 1 1 0751 -1 1 2806 bp Feature: gene Location: 112862-114607 bp Feature: domain Description: Hydantoinase_B Location: 112877-114461 bp Feature: domain Description: Hydantoinase_B Location: 1 1 2877-1 1 4461 bp Feature: gene Location: 114908-116281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115265-115880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5265-1 1 5880 bp Feature: domain Description: GIIM Note: maturase Location: 115934-116162 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5934-1 1 61 62 bp Feature: gene Location: 116781-117959 bp Feature: domain Description: Porin_O_P Location: 117006-117843 bp Feature: domain Description: Porin_O_P Location: 1 1 7006-1 1 7843 bp Feature: gene Location: 118107-119468 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 118164-119424 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 1 1 81 64-1 1 9424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396), SLC-NCS1sbd_CobB-like (cd11484)

Seq: LLRV01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig14, whole genome shotgun sequence (176092 bp)
Overview 1 RT 1: 117000-124115 bp Neighborhood of RT #1 [117000, 124126] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Feature: gene Location: 117000-117641 bp Feature: domain Description: clpP Location: 117054-117630 bp Feature: domain Description: clpP Location: 117054-117630 bp Feature: gene Location: 117735-119045 bp Feature: domain Description: tig Location: 117738-119016 bp Feature: domain Description: tig Location: 117738-119016 bp Feature: gene Location: 119175-120878 bp Feature: RT Description: RVT_N Location: 119232-119475 bp Feature: RT Description: RVT_N Location: 1192 32 -119475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119520-120156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11952 0-12 0156 bp Feature: domain Description: GIIM Note: maturase Location: 120207-120441 bp Feature: domain Description: GIIM Note: maturase Location: 12 02 07-12 0441 bp Feature: domain Description: HNH Note: nucleases Location: 120693-120831 bp Feature: domain Description: HNH Note: nucleases Location: 12 0693-12 0831 bp Feature: gene Location: 122132-122839 bp Feature: domain Description: OmpR Location: 122156-122822 bp Feature: domain Description: OmpR Location: 12 2 156-12 2 82 2 bp Feature: gene Location: 122840-124126 bp Feature: domain Description: PRK10604 Location: 122843-124115 bp Feature: domain Description: PRK10604 Location: 12 2 843-12 4115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional)

Seq: LLRV01000131.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig30, whole genome shotgun sequence (55387 bp)
Overview 1 RT 1: 50696-55339 bp Neighborhood of RT #1 [50696, 55387] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc HTH_38 Feature: gene Location: 50696-52030 bp Feature: domain Description: PRK13360 Location: 50699-52022 bp Feature: domain Description: PRK13 3 60 Location: 50699-52022 bp Feature: gene Location: 52096-52458 bp Feature: domain Description: COG3450 Location: 52099-52444 bp Feature: domain Description: COG3 450 Location: 52099-52444 bp Feature: gene Location: 52663-54369 bp Feature: RT Description: RVT_N Location: 52720-52960 bp Feature: RT Description: RVT_N Location: 52720-52960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53008-53644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 008-53 644 bp Feature: domain Description: YkfC Location: 53866-54010 bp Feature: domain Description: YkfC Location: 53 866-54010 bp Feature: domain Description: HNHc Note: nucleases Location: 54139-54313 bp Feature: domain Description: HNHc Note: nucleases Location: 5413 9-543 13 bp Feature: gene Location: 54565-54942 bp Feature: gene Location: 55204-55387 bp Feature: domain Description: HTH_38 Location: 55210-55339 bp Feature: domain Description: HTH_3 8 Location: 55210-553 3 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HTH_38 (pfam13936)

Seq: LLRV01000130.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig3, whole genome shotgun sequence (379761 bp)
Overview 1 RT 1: 15182-23373 bp 2 RT 2: 39637-49934 bp Neighborhood of RT #1 [15182, 23381] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [39637, 49945] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 15182-16198 bp Feature: domain Description: COG3178 Location: 15185-16184 bp Feature: domain Description: COG3178 Location: 15185-16184 bp Feature: gene Location: 17071-17283 bp Feature: gene Location: 17471-19183 bp Feature: RT Description: RVT_N Location: 17528-17771 bp Feature: RT Description: RVT_N Location: 17528-17771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17816-18452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17816-184 52 bp Feature: domain Description: YkfC Location: 18662-18812 bp Feature: domain Description: YkfC Location: 18662-18812 bp Feature: domain Description: HNH Note: nucleases Location: 18989-19127 bp Feature: domain Description: HNH Note: nucleases Location: 18989-19127 bp Feature: gene Location: 19316-22108 bp Feature: domain Description: LptD Location: 19511-22094 bp Feature: domain Description: LptD Location: 19511-22094 bp Feature: gene Location: 22089-23381 bp Feature: domain Description: PRK10770 Location: 22179-23373 bp Feature: domain Description: PRK10770 Location: 22179-23373 bp Feature: gene Location: 39637-41490 bp Feature: domain Description: PRK05658 Location: 39649-41488 bp Feature: domain Description: PRK05658 Location: 3964 9-4 14 88 bp Feature: gene Location: 41597-45334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 41705-42362 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4 1705-4 2362 bp Feature: domain Description: PRK09776 Location: 42575-43046 bp Feature: domain Description: PRK09776 Location: 4 2575-4 304 6 bp Feature: domain Description: PAS Location: 43118-43628 bp Feature: domain Description: PAS Location: 4 3118-4 3628 bp Feature: domain Description: PRK10060 Location: 43637-45284 bp Feature: domain Description: PRK10060 Location: 4 3637-4 5284 bp Feature: gene Location: 46415-48100 bp Feature: RT Description: RVT_N Location: 46472-46712 bp Feature: RT Description: RVT_N Location: 4 64 72-4 6712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46760-47396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6760-4 7396 bp Feature: domain Description: GIIM Note: maturase Location: 47450-47681 bp Feature: domain Description: GIIM Note: maturase Location: 4 74 50-4 7681 bp Feature: domain Description: HNH Note: nucleases Location: 47933-48071 bp Feature: domain Description: HNH Note: nucleases Location: 4 7933-4 8071 bp Feature: gene Location: 48428-48565 bp Feature: gene Location: 48824-49945 bp Feature: domain Description: COG3177 Location: 48842-49934 bp Feature: domain Description: COG3177 Location: 4 884 2-4 9934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLRV01000185.1 Pseudomonas aeruginosa strain WH-SGI-V-07650 WH-SGI-V-07650_contig8, whole genome shotgun sequence (266925 bp)
Overview 1 RT 1: 247839-254460 bp Neighborhood of RT #1 [247839, 254460] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF Feature: gene Location: 247839-249284 bp Feature: domain Description: AdoMet_MTases Location: 247962-248328 bp Feature: domain Description: AdoMet_MTases Location: 247962-248328 bp Feature: gene Location: 249389-250414 bp Feature: domain Description: DEXHc_Snf Location: 249581-249827 bp Feature: domain Description: DEXHc_Snf Location: 2495 81-249827 bp Feature: gene Location: 251011-252729 bp Feature: RT Description: RVT_N Location: 251068-251305 bp Feature: RT Description: RVT_N Location: 25 1068-25 1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251356-252007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 135 6-25 2007 bp Feature: domain Description: GIIM Note: maturase Location: 252061-252292 bp Feature: domain Description: GIIM Note: maturase Location: 25 2061-25 2292 bp Feature: domain Description: HNHc Note: nucleases Location: 252526-252682 bp Feature: domain Description: HNHc Note: nucleases Location: 25 25 26-25 2682 bp Feature: gene Location: 252812-254056 bp Feature: domain Description: KOG0387 Location: 252836-252962 bp Feature: domain Description: KOG0387 Location: 25 2836-25 2962 bp Feature: domain Description: SF2_C_SNF Location: 253514-253892 bp Feature: domain Description: SF2_C_SNF Location: 25 35 14-25 3892 bp Feature: gene Location: 254158-254460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793)