myRT

myRT report for GCA_001453725.1_WH-SGI-V-07698

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Seq: LLSS01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07698 WH-SGI-V-07698_contig1, whole genome shotgun sequence (436474 bp)
Overview 1 RT 1: 62480-70652 bp 2 RT 2: 86917-97213 bp Neighborhood of RT #1 [62480, 70660] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86917, 97224] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 62480-63496 bp Feature: domain Description: COG3178 Location: 62483-63482 bp Feature: domain Description: COG31 78 Location: 62483-63482 bp Feature: gene Location: 64369-64581 bp Feature: gene Location: 64768-66480 bp Feature: RT Description: RVT_N Location: 64825-65068 bp Feature: RT Description: RVT_N Location: 64825-65068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65113-65746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 651 1 3-65746 bp Feature: domain Description: YkfC Location: 65959-66109 bp Feature: domain Description: YkfC Location: 65959-661 09 bp Feature: domain Description: HNH Note: nucleases Location: 66286-66424 bp Feature: domain Description: HNH Note: nucleases Location: 66286-66424 bp Feature: gene Location: 66613-69387 bp Feature: domain Description: LptD Location: 66808-69373 bp Feature: domain Description: LptD Location: 66808-69373 bp Feature: gene Location: 69368-70660 bp Feature: domain Description: PRK10770 Location: 69458-70652 bp Feature: domain Description: PRK1 0770 Location: 69458-70652 bp Feature: gene Location: 86917-88770 bp Feature: domain Description: PRK05658 Location: 86929-88768 bp Feature: domain Description: PRK05658 Location: 86929-88768 bp Feature: gene Location: 88877-92614 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88985-89642 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88985-89642 bp Feature: domain Description: PRK09776 Location: 89855-90326 bp Feature: domain Description: PRK09776 Location: 89855-90326 bp Feature: domain Description: PAS Location: 90371-90908 bp Feature: domain Description: PAS Location: 90371 -90908 bp Feature: domain Description: PRK10060 Location: 90917-92564 bp Feature: domain Description: PRK1 0060 Location: 9091 7-92564 bp Feature: gene Location: 93695-95380 bp Feature: RT Description: RVT_N Location: 93752-93992 bp Feature: RT Description: RVT_N Location: 93752-93992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94040-94676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94040-94676 bp Feature: domain Description: GIIM Note: maturase Location: 94730-94961 bp Feature: domain Description: GIIM Note: maturase Location: 94730-94961 bp Feature: domain Description: HNH Note: nucleases Location: 95213-95351 bp Feature: domain Description: HNH Note: nucleases Location: 9521 3-95351 bp Feature: gene Location: 95708-95844 bp Feature: gene Location: 96103-97224 bp Feature: domain Description: COG3177 Location: 96121-97213 bp Feature: domain Description: COG31 77 Location: 961 21 -9721 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )