myRT

myRT report for GCA_001453735.1_WH-SGI-V-07701

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Seq: LLSV01000078.1 Pseudomonas aeruginosa strain WH-SGI-V-07701 WH-SGI-V-07701_contig24, whole genome shotgun sequence (105571 bp)
Overview 1 RT 1: 5700-9775 bp Neighborhood of RT #1 [5700, 9775] DUF3085 RVT-GII GIIM Feature: gene Location: 5700-6065 bp Ori: KSO92319.1 Feature: domain Description: DUF3085 Location: 5766-6036 bp Feature: domain Description: DUF3085 Location: 5766-6036 bp Feature: gene Location: 6131-6928 bp Feature: gene Location: 7268-8638 bp Ori: KSO92321.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7604-8219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7604-821 9 bp Feature: domain Description: GIIM Note: maturase Location: 8276-8492 bp Feature: domain Description: GIIM Note: maturase Location: 8276-8492 bp Feature: gene Location: 8719-9017 bp Feature: gene Location: 9059-9775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3085 (pfam11284), RVT-GII, GIIM (pfam08388)

Seq: LLSV01000100.1 Pseudomonas aeruginosa strain WH-SGI-V-07701 WH-SGI-V-07701_contig44, whole genome shotgun sequence (34408 bp)
Overview 1 RT 1: 30255-34408 bp Neighborhood of RT #1 [30255, 34408] COG4127 AlpA RVT-UG5 nitrilase Feature: gene Location: 30255-31247 bp Ori: KSO87750.1 Feature: domain Description: COG4127 Location: 30261-31236 bp Feature: domain Description: COG412 7 Location: 302 61-312 36 bp Feature: gene Location: 31252-31464 bp Ori: OPE22121.1 Feature: domain Description: AlpA Location: 31255-31426 bp Feature: domain Description: AlpA Location: 312 55-3142 6 bp Feature: gene Location: 31617-34106 bp Ori: KSO87751.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31623-32058 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3162 3-32 058 bp Feature: domain Description: nitrilase Location: 33420-34002 bp Feature: domain Description: nitrilase Location: 3342 0-34002 bp Feature: gene Location: 34191-34408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), AlpA (COG3311), RVT-UG5, nitrilase (cl11424)

Seq: LLSV01000137.1 Pseudomonas aeruginosa strain WH-SGI-V-07701 WH-SGI-V-07701_contig78, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 618-2289 bp Neighborhood of RT #1 [618, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 618-2336 bp Ori: KSO83443.1 Feature: domain Description: RVT_N Location: 675-912 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963 -1614 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 213 3 -2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LLSV01000134.1 Pseudomonas aeruginosa strain WH-SGI-V-07701 WH-SGI-V-07701_contig75, whole genome shotgun sequence (2991 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Ori: KSO83455.1 Feature: domain Description: RVT_N Location: 132-375 bp Feature: domain Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 20-1056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1254 -1359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)