myRT

myRT report for GCA_001453825.1_WH-SGI-V-07251

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Seq: LLTL01000060.1 Pseudomonas aeruginosa strain WH-SGI-V-07251 WH_SGI_V_07251_4, whole genome shotgun sequence (371135 bp)
Overview 1 RT 1: 290155-299300 bp Neighborhood of RT #1 [290155, 299302] HipA_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 290155-290232 bp Feature: gene Location: 290218-290535 bp Feature: domain Description: HipA_C Location: 290251-290419 bp Feature: domain Description: HipA_C Location: 290251 -29041 9 bp Feature: gene Location: 290839-292524 bp Feature: RT Description: RVT_N Location: 290896-291136 bp Feature: RT Description: RVT_N Location: 290896-291 1 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291184-291820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 1 84-291 820 bp Feature: domain Description: GIIM Note: maturase Location: 291874-292105 bp Feature: domain Description: GIIM Note: maturase Location: 291 874-2921 05 bp Feature: domain Description: HNH Note: nucleases Location: 292357-292495 bp Feature: domain Description: HNH Note: nucleases Location: 292357-292495 bp Feature: gene Location: 293605-297342 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 293713-294370 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 29371 3-294370 bp Feature: domain Description: PRK09776 Location: 294583-295054 bp Feature: domain Description: PRK09776 Location: 294583-295054 bp Feature: domain Description: PAS Location: 295099-295636 bp Feature: domain Description: PAS Location: 295099-295636 bp Feature: domain Description: PRK10060 Location: 295645-297292 bp Feature: domain Description: PRK1 0060 Location: 295645-297292 bp Feature: gene Location: 297449-299302 bp Feature: domain Description: PRK05658 Location: 297461-299300 bp Feature: domain Description: PRK05658 Location: 297461 -299300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_C (pfam07804), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)