myRT

myRT report for GCA_001453855.1_WH-SGI-V-07256

Download annotations/find similar RTs

Seq: LLTQ01000103.1 Pseudomonas aeruginosa strain WH-SGI-V-07256 WH_SGI_V_07256_28, whole genome shotgun sequence (85932 bp)
Overview 1 RT 1: 1319-11322 bp 2 RT 2: 27580-35744 bp Neighborhood of RT #1 [1319, 11324] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [27580, 35758] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 1319-1555 bp Ori: KSQ50568.1 Feature: domain Description: HTH_XRE Location: 1337-1454 bp Feature: domain Description: HTH_XRE Location: 1 337-1 454 bp Feature: gene Location: 1560-2579 bp Feature: domain Description: int Location: 1566-2577 bp Feature: domain Description: int Location: 1 566-2577 bp Feature: gene Location: 2861-4546 bp Ori: KSQ50569.1 Feature: domain Description: RVT_N Location: 2918-3158 bp Feature: domain Description: RVT_N Location: 291 8-31 58 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206-3842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206-3842 bp Feature: domain Description: GIIM Note: maturase Location: 3896-4127 bp Feature: domain Description: GIIM Note: maturase Location: 3896-41 27 bp Feature: domain Description: HNH Note: nucleases Location: 4379-4517 bp Feature: domain Description: HNH Note: nucleases Location: 4379-451 7 bp Feature: gene Location: 5627-9364 bp Ori: KSQ50570.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5735-6392 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5735-6392 bp Feature: domain Description: PRK09776 Location: 6605-7076 bp Feature: domain Description: PRK09776 Location: 6605-7076 bp Feature: domain Description: PAS Location: 7133-7658 bp Feature: domain Description: PAS Location: 71 33-7658 bp Feature: domain Description: PRK10060 Location: 7670-9314 bp Feature: domain Description: PRK1 0060 Location: 7670-931 4 bp Feature: gene Location: 9471-11324 bp Ori: KSQ50571.1 Feature: domain Description: PRK05658 Location: 9483-11322 bp Feature: domain Description: PRK05658 Location: 9483-1 1 322 bp Feature: gene Location: 27580-28872 bp Ori: KSQ50589.1 Feature: domain Description: PRK10770 Location: 27670-28864 bp Feature: domain Description: PRK1 0770 Location: 27670-28864 bp Feature: gene Location: 28853-31624 bp Ori: KSQ50590.1 Feature: domain Description: LptD Location: 29048-31610 bp Feature: domain Description: LptD Location: 29048-31 61 0 bp Feature: gene Location: 31757-33469 bp Ori: KSQ50591.1 Feature: domain Description: RVT_N Location: 31814-32057 bp Feature: domain Description: RVT_N Location: 31 81 4-32057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32102-32738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 02-32738 bp Feature: domain Description: YkfC Location: 32948-33098 bp Feature: domain Description: YkfC Location: 32948-33098 bp Feature: domain Description: HNH Note: nucleases Location: 33275-33413 bp Feature: domain Description: HNH Note: nucleases Location: 33275-3341 3 bp Feature: gene Location: 33657-33869 bp Feature: gene Location: 34742-35758 bp Ori: KSQ50592.1 Feature: domain Description: COG3178 Location: 34745-35744 bp Feature: domain Description: COG31 78 Location: 34745-35744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLTQ01000118.1 Pseudomonas aeruginosa strain WH-SGI-V-07256 WH_SGI_V_07256_41, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSQ47090.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF2 62 Location: 2 6042 -2 6810 bp Feature: gene Location: 27869-28609 bp Ori: KSQ47096.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 2 7884-2 8475 bp Feature: gene Location: 29647-32145 bp Ori: KSQ47091.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSQ47093.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_2 1 Location: 332 93-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_2 1 Location: 33836-34166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLTQ01000079.1 Pseudomonas aeruginosa strain WH-SGI-V-07256 WH_SGI_V_07256_17, whole genome shotgun sequence (166303 bp)
Overview 1 RT 1: 160534-166303 bp Neighborhood of RT #1 [160534, 166303] CHD CHD RVT-GII GIIM Feature: gene Location: 160534-162078 bp Ori: KSQ55853.1 Feature: domain Description: CHD Location: 160750-161164 bp Feature: domain Description: CHD Location: 160750-161164 bp Feature: domain Description: CHD Location: 161392-161881 bp Feature: domain Description: CHD Location: 1613 92-161881 bp Feature: gene Location: 163597-163923 bp Feature: gene Location: 164073-165341 bp Ori: KSQ55854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164286-164943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164286-164943 bp Feature: domain Description: GIIM Note: maturase Location: 165021-165243 bp Feature: domain Description: GIIM Note: maturase Location: 165021-165243 bp Feature: gene Location: 165861-166303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLTQ01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07256 WH_SGI_V_07256_14, whole genome shotgun sequence (185126 bp)
Overview 1 RT 1: 87181-91933 bp Neighborhood of RT #1 [87181, 91933] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 87181-88125 bp Ori: KSQ59074.1 Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: gene Location: 89082-89359 bp Feature: gene Location: 89446-91167 bp Ori: KSQ59075.1 Feature: domain Description: RVT_N Location: 89503-89740 bp Feature: domain Description: RVT_N Location: 89503-8974 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-90427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-904 27 bp Feature: domain Description: YkfC Location: 90625-90781 bp Feature: domain Description: YkfC Location: 90625-90781 bp Feature: domain Description: HNH Note: nucleases Location: 90964-91102 bp Feature: domain Description: HNH Note: nucleases Location: 90964 -91102 bp Feature: gene Location: 91243-91497 bp Ori: KSQ59076.1 Feature: domain Description: SdhE Location: 91249-91489 bp Feature: domain Description: SdhE Location: 9124 9-914 89 bp Feature: gene Location: 91481-91933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)