myRT

myRT report for GCA_001453915.1_WH-SGI-V-07278

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Seq: LLUE01000020.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig15, whole genome shotgun sequence (146094 bp)
Overview 1 RT 1: 50256-58443 bp 2 RT 2: 74708-85004 bp Neighborhood of RT #1 [50256, 58451] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74708, 85015] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50256-51272 bp Ori: KSR11630.1 Feature: domain Description: COG3178 Location: 50259-51258 bp Feature: domain Description: COG31 78 Location: 50259-51 258 bp Feature: gene Location: 52145-52357 bp Feature: gene Location: 52544-54256 bp Ori: KSR11631.1 Feature: domain Description: RVT_N Location: 52601-52844 bp Feature: domain Description: RVT_N Location: 52601 -52844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52889-53525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52889-53525 bp Feature: domain Description: YkfC Location: 53735-53885 bp Feature: domain Description: YkfC Location: 53735-53885 bp Feature: domain Description: HNH Note: nucleases Location: 54062-54200 bp Feature: domain Description: HNH Note: nucleases Location: 54062-54200 bp Feature: gene Location: 54389-57178 bp Ori: KSR11632.1 Feature: domain Description: LptD Location: 54584-57164 bp Feature: domain Description: LptD Location: 54584-571 64 bp Feature: gene Location: 57159-58451 bp Ori: KSR11633.1 Feature: domain Description: PRK10770 Location: 57249-58443 bp Feature: domain Description: PRK1 0770 Location: 57249-58443 bp Feature: gene Location: 74708-76561 bp Ori: KSR11651.1 Feature: domain Description: PRK05658 Location: 74720-76559 bp Feature: domain Description: PRK05658 Location: 74720-76559 bp Feature: gene Location: 76668-80405 bp Ori: KSR11652.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76776-77433 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76776-77433 bp Feature: domain Description: PRK09776 Location: 77646-78117 bp Feature: domain Description: PRK09776 Location: 77646-781 1 7 bp Feature: domain Description: PAS Location: 78207-78699 bp Feature: domain Description: PAS Location: 78207-78699 bp Feature: domain Description: PRK10060 Location: 78708-80355 bp Feature: domain Description: PRK1 0060 Location: 78708-80355 bp Feature: gene Location: 81486-83171 bp Ori: KSR11653.1 Feature: domain Description: RVT_N Location: 81543-81783 bp Feature: domain Description: RVT_N Location: 81 543-81 783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81831-82467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 831 -82467 bp Feature: domain Description: GIIM Note: maturase Location: 82521-82752 bp Feature: domain Description: GIIM Note: maturase Location: 82521 -82752 bp Feature: domain Description: HNH Note: nucleases Location: 83004-83142 bp Feature: domain Description: HNH Note: nucleases Location: 83004-831 42 bp Feature: gene Location: 83498-83635 bp Feature: gene Location: 83894-85015 bp Ori: KSR11655.1 Feature: domain Description: COG3177 Location: 83912-85004 bp Feature: domain Description: COG31 77 Location: 8391 2-85004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLUE01000025.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig2, whole genome shotgun sequence (433440 bp)
Overview 1 RT 1: 116120-123235 bp Neighborhood of RT #1 [116120, 123246] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Feature: gene Location: 116120-116761 bp Ori: KSR09873.1 Feature: domain Description: clpP Location: 116174-116750 bp Feature: domain Description: clpP Location: 116174-116750 bp Feature: gene Location: 116855-118165 bp Ori: KSR09874.1 Feature: domain Description: tig Location: 116858-118136 bp Feature: domain Description: tig Location: 116858-118136 bp Feature: gene Location: 118295-119998 bp Ori: KSR09875.1 Feature: domain Description: RVT_N Location: 118352-118595 bp Feature: domain Description: RVT_N Location: 118352 -118595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118640-119276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118640-1192 76 bp Feature: domain Description: GIIM Note: maturase Location: 119327-119561 bp Feature: domain Description: GIIM Note: maturase Location: 11932 7-119561 bp Feature: domain Description: HNH Note: nucleases Location: 119813-119951 bp Feature: domain Description: HNH Note: nucleases Location: 119813-119951 bp Feature: gene Location: 121252-121959 bp Ori: KSR09876.1 Feature: domain Description: OmpR Location: 121276-121942 bp Feature: domain Description: OmpR Location: 12 12 76-12 1942 bp Feature: gene Location: 121960-123246 bp Ori: KSR09877.1 Feature: domain Description: PRK10604 Location: 121963-123235 bp Feature: domain Description: PRK10604 Location: 12 1963-12 32 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional)

Seq: LLUE01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07278 WH-SGI-V-07278_contig1, whole genome shotgun sequence (593683 bp)
Overview 1 RT 1: 452513-459699 bp Neighborhood of RT #1 [452513, 459863] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 452513-454954 bp Ori: KSR15874.1 Feature: domain Description: STN Location: 452672-452825 bp Feature: domain Description: STN Location: 452672-452825 bp Feature: domain Description: TonB-siderophor Location: 452933-454892 bp Feature: domain Description: TonB-siderophor Location: 45293 3 -454892 bp Feature: gene Location: 455115-455951 bp Ori: KSR15875.1 Feature: domain Description: YHI9 Location: 455127-455943 bp Feature: domain Description: YHI9 Location: 455127-455943 bp Feature: gene Location: 456135-457424 bp Ori: KSR15876.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 456327-457113 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4563 27-457113 bp Feature: gene Location: 457980-459248 bp Ori: KSR15877.1 Feature: domain Description: PRK06333 Location: 457986-459243 bp Feature: domain Description: PRK063 3 3 Location: 457986-459243 bp Feature: gene Location: 459357-459863 bp Ori: KSR15878.1 Feature: domain Description: HxlR Location: 459381-459699 bp Feature: domain Description: HxlR Location: 4593 81-459699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STN (smart00965), TonB-siderophor (TIGR01783), YHI9 (COG0384), RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)