myRT

myRT report for GCA_001454145.1_WH-SGI-V-07291

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Seq: LLUO01000054.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_3, whole genome shotgun sequence (644949 bp)
Overview 1 RT 1: 226249-233652 bp Neighborhood of RT #1 [226249, 233762] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF LysR Feature: gene Location: 226249-227694 bp Feature: domain Description: AdoMet_MTases Location: 226372-226738 bp Feature: domain Description: AdoMet_MTases Location: 226372-226738 bp Feature: gene Location: 227799-228824 bp Feature: domain Description: DEXHc_Snf Location: 227991-228237 bp Feature: domain Description: DEXHc_Snf Location: 227991 -228237 bp Feature: gene Location: 229421-231139 bp Feature: RT Description: RVT_N Location: 229478-229715 bp Feature: RT Description: RVT_N Location: 229478-22971 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229766-230417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229766-23041 7 bp Feature: domain Description: GIIM Note: maturase Location: 230471-230702 bp Feature: domain Description: GIIM Note: maturase Location: 230471 -230702 bp Feature: domain Description: HNHc Note: nucleases Location: 230936-231092 bp Feature: domain Description: HNHc Note: nucleases Location: 230936-231 092 bp Feature: gene Location: 231222-232466 bp Feature: domain Description: KOG0387 Location: 231246-231372 bp Feature: domain Description: KOG0387 Location: 231 246-231 372 bp Feature: domain Description: SF2_C_SNF Location: 231924-232302 bp Feature: domain Description: SF2_C_SNF Location: 231 924-232302 bp Feature: gene Location: 232749-233762 bp Feature: domain Description: LysR Location: 232752-233652 bp Feature: domain Description: LysR Location: 232752-233652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), LysR (COG0583)

Seq: LLUO01000064.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_39, whole genome shotgun sequence (4381 bp)
Overview 1 RT 1: 1-4012 bp Neighborhood of RT #1 [1, 4012] Y2_Tnp DUF5440 RVT-GII GIIM APH Feature: gene Location: 1-718 bp Feature: domain Description: Y2_Tnp Location: 100-718 bp Feature: domain Description: Y2 _Tnp Location: 100-718 bp Feature: gene Location: 711-1001 bp Feature: domain Description: DUF5440 Location: 714-999 bp Feature: domain Description: DUF5440 Location: 714-999 bp Feature: gene Location: 1472-2893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829-2444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 9-2 444 bp Feature: domain Description: GIIM Note: maturase Location: 2498-2726 bp Feature: domain Description: GIIM Note: maturase Location: 2 498-2 72 6 bp Feature: gene Location: 3010-3825 bp Feature: domain Description: APH Location: 3088-3823 bp Feature: domain Description: APH Location: 3088-382 3 bp Feature: gene Location: 3860-4012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Y2_Tnp (pfam04986), DUF5440 (pfam17509)