myRT

myRT report for GCA_001454205.1_WH-SGI-V-07295

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Seq: LLUR01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07295 WH-SGI-V-07295_contig18, whole genome shotgun sequence (133831 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: gene Location: 963-2231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 76-1 833 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 1 -21 33 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLUR01000051.1 Pseudomonas aeruginosa strain WH-SGI-V-07295 WH-SGI-V-07295_contig4, whole genome shotgun sequence (417927 bp)
Overview 1 RT 1: 92686-100885 bp 2 RT 2: 117150-127449 bp Neighborhood of RT #1 [92686, 100893] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [117150, 127460] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 92686-93702 bp Feature: domain Description: COG3178 Location: 92689-93688 bp Feature: domain Description: COG3178 Location: 92 689-93688 bp Feature: gene Location: 94575-94829 bp Feature: gene Location: 94974-96686 bp Feature: RT Description: RVT_N Location: 95031-95274 bp Feature: RT Description: RVT_N Location: 95031-952 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95319-95955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95319-95955 bp Feature: domain Description: YkfC Location: 96165-96315 bp Feature: domain Description: YkfC Location: 96165-96315 bp Feature: domain Description: HNH Note: nucleases Location: 96492-96630 bp Feature: domain Description: HNH Note: nucleases Location: 96492 -96630 bp Feature: gene Location: 96819-99620 bp Feature: domain Description: LptD Location: 97014-99606 bp Feature: domain Description: LptD Location: 97014-99606 bp Feature: gene Location: 99601-100893 bp Feature: domain Description: PRK10770 Location: 99691-100885 bp Feature: domain Description: PRK10770 Location: 99691-100885 bp Feature: gene Location: 117150-119003 bp Feature: domain Description: PRK05658 Location: 117162-119001 bp Feature: domain Description: PRK05658 Location: 117162 -119001 bp Feature: gene Location: 119110-122847 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 119218-119875 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 1192 18-119875 bp Feature: domain Description: PRK09776 Location: 120088-120559 bp Feature: domain Description: PRK09776 Location: 12 0088-12 0559 bp Feature: domain Description: PAS Location: 120604-121141 bp Feature: domain Description: PAS Location: 12 0604-12 1141 bp Feature: domain Description: PRK10060 Location: 121150-122797 bp Feature: domain Description: PRK10060 Location: 12 1150-12 2 797 bp Feature: gene Location: 123928-125613 bp Feature: RT Description: RVT_N Location: 123985-124225 bp Feature: RT Description: RVT_N Location: 12 3985-12 42 2 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124273-124909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 73-12 4909 bp Feature: domain Description: GIIM Note: maturase Location: 124963-125194 bp Feature: domain Description: GIIM Note: maturase Location: 12 4963-12 5194 bp Feature: domain Description: HNH Note: nucleases Location: 125446-125584 bp Feature: domain Description: HNH Note: nucleases Location: 12 5446-12 5584 bp Feature: gene Location: 125916-126077 bp Feature: gene Location: 126339-127460 bp Feature: domain Description: COG3177 Location: 126357-127449 bp Feature: domain Description: COG3177 Location: 12 6357-12 7449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )