myRT

myRT report for GCA_001454225.1_WH-SGI-V-07296

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Seq: LLUS01000104.1 Pseudomonas aeruginosa strain WH-SGI-V-07296 WH_SGI_V_07296_9, whole genome shotgun sequence (260153 bp)
Overview 1 RT 1: 254384-260153 bp Neighborhood of RT #1 [254384, 260153] CHD CHD RVT-GII GIIM Feature: gene Location: 254384-255928 bp Ori: KSR50640.1 Feature: domain Description: CHD Location: 254600-255014 bp Feature: domain Description: CHD Location: 254600-25501 4 bp Feature: domain Description: CHD Location: 255242-255731 bp Feature: domain Description: CHD Location: 255242-255731 bp Feature: gene Location: 257447-257773 bp Feature: gene Location: 257923-259191 bp Ori: KSR50641.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258136-258793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 36-258793 bp Feature: domain Description: GIIM Note: maturase Location: 258871-259093 bp Feature: domain Description: GIIM Note: maturase Location: 258871 -259093 bp Feature: gene Location: 259711-260153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLUS01000093.1 Pseudomonas aeruginosa strain WH-SGI-V-07296 WH_SGI_V_07296_8, whole genome shotgun sequence (274143 bp)
Overview 1 RT 1: 93194-97911 bp Neighborhood of RT #1 [93194, 97946] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93194-93646 bp Feature: gene Location: 93630-93884 bp Ori: KSR50912.1 Feature: domain Description: SdhE Location: 93636-93876 bp Feature: domain Description: SdhE Location: 93636-93876 bp Feature: gene Location: 93960-95681 bp Ori: KSR50913.1 Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: domain Description: RVT_N Location: 94017-942 54 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: domain Description: YkfC Location: 95139-95295 bp Feature: domain Description: YkfC Location: 95139-952 95 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: gene Location: 95768-96045 bp Feature: gene Location: 97002-97946 bp Ori: KSR50914.1 Feature: domain Description: YgfZ Location: 97011-97911 bp Feature: domain Description: YgfZ Location: 97011-97911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: LLUS01000071.1 Pseudomonas aeruginosa strain WH-SGI-V-07296 WH_SGI_V_07296_6, whole genome shotgun sequence (377631 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KSR52441.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3 178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSR52442.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53 445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53 655-53 805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53 982-54120 bp Feature: gene Location: 54309-57080 bp Ori: KSR52443.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSR52444.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-583 45 bp Feature: gene Location: 74609-76462 bp Ori: KSR52462.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: gene Location: 76569-80306 bp Ori: KSR52463.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-773 3 4 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: gene Location: 81387-83072 bp Ori: KSR52464.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8173 2-823 68 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83 043 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KSR52465.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG3 177 Location: 83 813 -84905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLUS01000044.1 Pseudomonas aeruginosa strain WH-SGI-V-07296 WH_SGI_V_07296_35, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSR56112.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 2604 2-26810 bp Feature: gene Location: 27869-28609 bp Ori: KSR56118.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 27884 -284 75 bp Feature: gene Location: 29647-32145 bp Ori: KSR56113.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSR56115.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_21 Location: 33836-34 166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)