myRT

myRT report for GCA_001454285.1_WH-SGI-V-07306

Download annotations/find similar RTs

Seq: LLUX01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07306 WH_SGI_V_07306_2, whole genome shotgun sequence (597724 bp)
Overview 1 RT 1: 64174-72364 bp 2 RT 2: 88628-98933 bp Neighborhood of RT #1 [64174, 72372] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88628, 98944] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 64174-65190 bp Feature: domain Description: COG3178 Location: 64177-65176 bp Feature: domain Description: COG31 78 Location: 641 77-651 76 bp Feature: gene Location: 66062-66274 bp Feature: gene Location: 66462-68174 bp Feature: RT Description: RVT_N Location: 66519-66762 bp Feature: RT Description: RVT_N Location: 6651 9-66762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66807-67443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66807-67443 bp Feature: domain Description: YkfC Location: 67650-67803 bp Feature: domain Description: YkfC Location: 67650-67803 bp Feature: domain Description: HNH Note: nucleases Location: 67980-68118 bp Feature: domain Description: HNH Note: nucleases Location: 67980-681 1 8 bp Feature: gene Location: 68307-71099 bp Feature: domain Description: LptD Location: 68502-71085 bp Feature: domain Description: LptD Location: 68502-71 085 bp Feature: gene Location: 71080-72372 bp Feature: domain Description: PRK10770 Location: 71170-72364 bp Feature: domain Description: PRK1 0770 Location: 71 1 70-72364 bp Feature: gene Location: 88628-90487 bp Feature: domain Description: PRK05658 Location: 88640-90485 bp Feature: domain Description: PRK05658 Location: 88640-90485 bp Feature: gene Location: 90594-94331 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90702-91359 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 90702-91 359 bp Feature: domain Description: PRK09776 Location: 91572-92043 bp Feature: domain Description: PRK09776 Location: 91 572-92043 bp Feature: domain Description: PAS Location: 92094-92625 bp Feature: domain Description: PAS Location: 92094-92625 bp Feature: domain Description: PRK10060 Location: 92634-94281 bp Feature: domain Description: PRK1 0060 Location: 92634-94281 bp Feature: gene Location: 95412-97097 bp Feature: RT Description: RVT_N Location: 95469-95709 bp Feature: RT Description: RVT_N Location: 95469-95709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95757-96393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95757-96393 bp Feature: domain Description: GIIM Note: maturase Location: 96447-96678 bp Feature: domain Description: GIIM Note: maturase Location: 96447-96678 bp Feature: domain Description: HNH Note: nucleases Location: 96930-97068 bp Feature: domain Description: HNH Note: nucleases Location: 96930-97068 bp Feature: gene Location: 97400-97561 bp Feature: gene Location: 97823-98944 bp Feature: domain Description: COG3177 Location: 97841-98933 bp Feature: domain Description: COG31 77 Location: 97841 -98933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )