myRT

myRT report for GCA_001454415.1_WH-SGI-V-07317

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Seq: LLVF01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07317 WH-SGI-V-07317_contig1, whole genome shotgun sequence (678190 bp)
Overview 1 RT 1: 120389-127803 bp Neighborhood of RT #1 [120389, 127925] rmlD RfbB RVT-Retrons NA37 Feature: gene Location: 120389-121297 bp Ori: KSS46150.1 Feature: domain Description: rmlD Location: 120398-121274 bp Feature: domain Description: rmlD Location: 1 20398-1 21 274 bp Feature: gene Location: 121294-122352 bp Ori: KSS46151.1 Feature: domain Description: RfbB Location: 121297-122344 bp Feature: domain Description: RfbB Location: 1 21 297-1 22344 bp Feature: gene Location: 122776-123744 bp Ori: OPE40594.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122917-123454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2291 7-1 23454 bp Feature: gene Location: 125348-126817 bp Feature: gene Location: 126819-127925 bp Ori: OPE40595.1 Feature: domain Description: NA37 Location: 127086-127803 bp Feature: domain Description: NA37 Location: 1 27086-1 27803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rmlD (TIGR01214), RfbB (COG1088), RVT-Retrons, NA37 (pfam04245)

Seq: LLVF01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07317 WH-SGI-V-07317_contig2, whole genome shotgun sequence (615339 bp)
Overview 1 RT 1: 81431-88315 bp Neighborhood of RT #1 [81431, 88335] IV_pilus_PilQ DEAH_box_HrpB RVT-UG15 PBP2_HisK Feature: gene Location: 81431-82045 bp Ori: KSS42232.1 Feature: domain Description: IV_pilus_PilQ Location: 81821-82031 bp Feature: domain Description: IV_pilus_PilQ Location: 8182 1-82 031 bp Feature: gene Location: 82360-84882 bp Ori: KSS42233.1 Feature: domain Description: DEAH_box_HrpB Location: 82372-84877 bp Feature: domain Description: DEAH_box_HrpB Location: 82 372 -84877 bp Feature: gene Location: 84993-86294 bp Ori: KSS42234.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 85098-85512 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 85098-85512 bp Feature: gene Location: 87170-87577 bp Feature: gene Location: 87601-88335 bp Ori: KSS42236.1 Feature: domain Description: PBP2_HisK Location: 87703-88315 bp Feature: domain Description: PBP2 _HisK Location: 87703-88315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IV_pilus_PilQ (TIGR02515), DEAH_box_HrpB (TIGR01970), RVT-UG15, PBP2_HisK (cd13704)