myRT

myRT report for GCA_001454445.1_WH-SGI-V-07322

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Seq: LLVI01000024.1 Pseudomonas aeruginosa strain WH-SGI-V-07322 WH_SGI_V_07322_12, whole genome shotgun sequence (191084 bp)
Overview 1 RT 1: 106169-116474 bp 2 RT 2: 132732-140896 bp Neighborhood of RT #1 [106169, 116476] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [132732, 140910] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 106169-107290 bp Ori: KSS94453.1 Feature: domain Description: COG3177 Location: 106187-107279 bp Feature: domain Description: COG31 77 Location: 1 061 87-1 07279 bp Feature: gene Location: 107549-107685 bp Feature: gene Location: 108013-109698 bp Ori: KSS94454.1 Feature: domain Description: RVT_N Location: 108070-108310 bp Feature: domain Description: RVT_N Location: 1 08070-1 0831 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108358-108994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08358-1 08994 bp Feature: domain Description: GIIM Note: maturase Location: 109048-109279 bp Feature: domain Description: GIIM Note: maturase Location: 1 09048-1 09279 bp Feature: domain Description: HNH Note: nucleases Location: 109531-109669 bp Feature: domain Description: HNH Note: nucleases Location: 1 09531 -1 09669 bp Feature: gene Location: 110779-114516 bp Ori: KSS94455.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 110887-111544 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 1 0887-1 1 1 544 bp Feature: domain Description: PRK09776 Location: 111757-112228 bp Feature: domain Description: PRK09776 Location: 1 1 1 757-1 1 2228 bp Feature: domain Description: PAS Location: 112285-112810 bp Feature: domain Description: PAS Location: 1 1 2285-1 1 281 0 bp Feature: domain Description: PRK10060 Location: 112822-114466 bp Feature: domain Description: PRK1 0060 Location: 1 1 2822-1 1 4466 bp Feature: gene Location: 114623-116476 bp Ori: KSS94456.1 Feature: domain Description: PRK05658 Location: 114635-116474 bp Feature: domain Description: PRK05658 Location: 1 1 4635-1 1 6474 bp Feature: gene Location: 132732-134024 bp Ori: KSS94474.1 Feature: domain Description: PRK10770 Location: 132822-134016 bp Feature: domain Description: PRK1 0770 Location: 1 32822-1 3401 6 bp Feature: gene Location: 134005-136776 bp Ori: KSS94475.1 Feature: domain Description: LptD Location: 134200-136762 bp Feature: domain Description: LptD Location: 1 34200-1 36762 bp Feature: gene Location: 136909-138621 bp Ori: KSS94476.1 Feature: domain Description: RVT_N Location: 136966-137209 bp Feature: domain Description: RVT_N Location: 1 36966-1 37209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137254-137890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37254-1 37890 bp Feature: domain Description: YkfC Location: 138100-138250 bp Feature: domain Description: YkfC Location: 1 381 00-1 38250 bp Feature: domain Description: HNH Note: nucleases Location: 138427-138565 bp Feature: domain Description: HNH Note: nucleases Location: 1 38427-1 38565 bp Feature: gene Location: 138809-139021 bp Feature: gene Location: 139894-140910 bp Ori: KSS94477.1 Feature: domain Description: COG3178 Location: 139897-140896 bp Feature: domain Description: COG31 78 Location: 1 39897-1 40896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLVI01000095.1 Pseudomonas aeruginosa strain WH-SGI-V-07322 WH_SGI_V_07322_5, whole genome shotgun sequence (300960 bp)
Overview 1 RT 1: 295191-300960 bp Neighborhood of RT #1 [295191, 300960] CHD CHD RVT-GII GIIM Feature: gene Location: 295191-296735 bp Ori: KSS82021.1 Feature: domain Description: CHD Location: 295407-295821 bp Feature: domain Description: CHD Location: 2 95407-2 9582 1 bp Feature: domain Description: CHD Location: 296049-296538 bp Feature: domain Description: CHD Location: 2 96049-2 96538 bp Feature: gene Location: 298254-298580 bp Feature: gene Location: 298730-299998 bp Ori: KSS82022.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298943-299600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 98943-2 99600 bp Feature: domain Description: GIIM Note: maturase Location: 299678-299900 bp Feature: domain Description: GIIM Note: maturase Location: 2 99678-2 99900 bp Feature: gene Location: 300518-300960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLVI01000088.1 Pseudomonas aeruginosa strain WH-SGI-V-07322 WH_SGI_V_07322_43, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSS82303.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: gene Location: 27869-28609 bp Ori: KSS82309.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 27884-28475 bp Feature: gene Location: 29647-32145 bp Ori: KSS82304.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-3 0091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSS82306.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 3 3 293 -3 3 3 62 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_21 Location: 3 3 83 6-3 4166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLVI01000059.1 Pseudomonas aeruginosa strain WH-SGI-V-07322 WH_SGI_V_07322_17, whole genome shotgun sequence (162241 bp)
Overview 1 RT 1: 70803-75520 bp Neighborhood of RT #1 [70803, 75555] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 70803-71255 bp Feature: gene Location: 71239-71493 bp Ori: KSS90383.1 Feature: domain Description: SdhE Location: 71245-71485 bp Feature: domain Description: SdhE Location: 7124 5-714 85 bp Feature: gene Location: 71569-73290 bp Ori: KSS90384.1 Feature: domain Description: RVT_N Location: 71626-71863 bp Feature: domain Description: RVT_N Location: 71626-71863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71914-72550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71914 -72550 bp Feature: domain Description: YkfC Location: 72748-72904 bp Feature: domain Description: YkfC Location: 7274 8-72904 bp Feature: domain Description: HNH Note: nucleases Location: 73087-73225 bp Feature: domain Description: HNH Note: nucleases Location: 73087-73225 bp Feature: gene Location: 73377-73654 bp Feature: gene Location: 74611-75555 bp Ori: KSS90385.1 Feature: domain Description: YgfZ Location: 74620-75520 bp Feature: domain Description: YgfZ Location: 74 620-75520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)