myRT

myRT report for GCA_001454465.1_WH-SGI-V-07323

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Seq: LLVJ01000104.1 Pseudomonas aeruginosa strain WH-SGI-V-07323 WH_SGI_V_07323_62, whole genome shotgun sequence (7476 bp)
Overview 1 RT 1: 777-5296 bp Neighborhood of RT #1 [777, 5490] RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 777-3275 bp Ori: KSS60887.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 780-1221 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 780-1 221 bp Feature: gene Location: 3794-4351 bp Feature: gene Location: 4351-5490 bp Ori: KSS60889.1 Feature: domain Description: AAA_21 Location: 4423-4492 bp Feature: domain Description: AAA_21 Location: 4423-4492 bp Feature: domain Description: AAA_21 Location: 4966-5296 bp Feature: domain Description: AAA_21 Location: 4966-5296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, AAA_21 (pfam13304)

Seq: LLVJ01000057.1 Pseudomonas aeruginosa strain WH-SGI-V-07323 WH_SGI_V_07323_2, whole genome shotgun sequence (499980 bp)
Overview 1 RT 1: 415365-425370 bp 2 RT 2: 441628-449792 bp Neighborhood of RT #1 [415365, 425372] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [441628, 449806] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 415365-415604 bp Ori: KSS67984.1 Feature: domain Description: HTH_XRE Location: 415377-415521 bp Feature: domain Description: HTH_XRE Location: 415377-41552 1 bp Feature: gene Location: 415609-416778 bp Ori: OPE41099.1 Feature: domain Description: int Location: 415615-416629 bp Feature: domain Description: int Location: 415615-41662 9 bp Feature: gene Location: 416909-418594 bp Ori: KSS67985.1 Feature: domain Description: RVT_N Location: 416966-417206 bp Feature: domain Description: RVT_N Location: 416966-4172 06 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417254-417890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 54-417890 bp Feature: domain Description: GIIM Note: maturase Location: 417944-418175 bp Feature: domain Description: GIIM Note: maturase Location: 417944-418175 bp Feature: domain Description: HNH Note: nucleases Location: 418427-418565 bp Feature: domain Description: HNH Note: nucleases Location: 41842 7-418565 bp Feature: gene Location: 419675-423412 bp Ori: KSS67986.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 419783-420440 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 419783-42 0440 bp Feature: domain Description: PRK09776 Location: 420653-421124 bp Feature: domain Description: PRK09776 Location: 42 0653-42 112 4 bp Feature: domain Description: PAS Location: 421181-421706 bp Feature: domain Description: PAS Location: 42 1181-42 1706 bp Feature: domain Description: PRK10060 Location: 421718-423362 bp Feature: domain Description: PRK10060 Location: 42 1718-42 3362 bp Feature: gene Location: 423519-425372 bp Ori: KSS67987.1 Feature: domain Description: PRK05658 Location: 423531-425370 bp Feature: domain Description: PRK05658 Location: 42 3531-42 5370 bp Feature: gene Location: 441628-442920 bp Ori: KSS68005.1 Feature: domain Description: PRK10770 Location: 441718-442912 bp Feature: domain Description: PRK10770 Location: 441718-442 912 bp Feature: gene Location: 442901-445672 bp Ori: KSS68006.1 Feature: domain Description: LptD Location: 443096-445658 bp Feature: domain Description: LptD Location: 443096-445658 bp Feature: gene Location: 445805-447517 bp Ori: KSS68007.1 Feature: domain Description: RVT_N Location: 445862-446105 bp Feature: domain Description: RVT_N Location: 445862 -446105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446150-446786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446150-446786 bp Feature: domain Description: YkfC Location: 446996-447146 bp Feature: domain Description: YkfC Location: 446996-447146 bp Feature: domain Description: HNH Note: nucleases Location: 447323-447461 bp Feature: domain Description: HNH Note: nucleases Location: 44732 3-447461 bp Feature: gene Location: 447705-447917 bp Feature: gene Location: 448790-449806 bp Ori: KSS68008.1 Feature: domain Description: COG3178 Location: 448793-449792 bp Feature: domain Description: COG3178 Location: 448793-449792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLVJ01000101.1 Pseudomonas aeruginosa strain WH-SGI-V-07323 WH_SGI_V_07323_6, whole genome shotgun sequence (262052 bp)
Overview 1 RT 1: 256283-262052 bp Neighborhood of RT #1 [256283, 262052] CHD CHD RVT-GII GIIM Feature: gene Location: 256283-257827 bp Ori: KSS61544.1 Feature: domain Description: CHD Location: 256499-256913 bp Feature: domain Description: CHD Location: 256499-256913 bp Feature: domain Description: CHD Location: 257141-257630 bp Feature: domain Description: CHD Location: 257141-25763 0 bp Feature: gene Location: 259346-259672 bp Feature: gene Location: 259822-261090 bp Ori: KSS61545.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260035-260692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26003 5-260692 bp Feature: domain Description: GIIM Note: maturase Location: 260770-260992 bp Feature: domain Description: GIIM Note: maturase Location: 260770-260992 bp Feature: gene Location: 261610-262052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)