myRT

myRT report for GCA_001454485.1_WH-SGI-V-07324

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Seq: LLVK01000083.1 Pseudomonas aeruginosa strain WH-SGI-V-07324 WH_SGI_V_07324_6, whole genome shotgun sequence (259999 bp)
Overview 1 RT 1: 254230-259999 bp Neighborhood of RT #1 [254230, 259999] CHD CHD RVT-GII GIIM Feature: gene Location: 254230-255774 bp Ori: KSS63149.1 Feature: domain Description: CHD Location: 254446-254860 bp Feature: domain Description: CHD Location: 254446-254860 bp Feature: domain Description: CHD Location: 255088-255577 bp Feature: domain Description: CHD Location: 255088-255577 bp Feature: gene Location: 257293-257619 bp Feature: gene Location: 257769-259037 bp Ori: KSS63150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257982-258639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257982-258639 bp Feature: domain Description: GIIM Note: maturase Location: 258717-258939 bp Feature: domain Description: GIIM Note: maturase Location: 25871 7-258939 bp Feature: gene Location: 259557-259999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLVK01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07324 WH_SGI_V_07324_26, whole genome shotgun sequence (91712 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84533 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84616] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 50175-51191 bp Ori: KSS70733.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSS70734.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52 52 1-52 764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982 -5412 0 bp Feature: gene Location: 54309-57080 bp Ori: KSS70735.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSS70736.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: gene Location: 74609-76462 bp Ori: KSS70754.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 7462 1-76460 bp Feature: gene Location: 76569-80306 bp Ori: KSS70755.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612 -802 56 bp Feature: gene Location: 81387-83072 bp Ori: KSS70756.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732 -82 368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82 42 2 -82 653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82 905-83043 bp Feature: gene Location: 83203-84372 bp Ori: OPE42180.1 Feature: domain Description: int Location: 83209-84223 bp Feature: domain Description: int Location: 832 09-842 2 3 bp Feature: gene Location: 84377-84616 bp Ori: KSS70757.1 Feature: domain Description: HTH_XRE Location: 84389-84533 bp Feature: domain Description: HTH_XRE Location: 84389-84533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: LLVK01000033.1 Pseudomonas aeruginosa strain WH-SGI-V-07324 WH_SGI_V_07324_14, whole genome shotgun sequence (185116 bp)
Overview 1 RT 1: 87181-91933 bp Neighborhood of RT #1 [87181, 91933] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 87181-88125 bp Ori: KSS74727.1 Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: domain Description: YgfZ Location: 87190-88090 bp Feature: gene Location: 89082-89359 bp Feature: gene Location: 89446-91167 bp Ori: KSS74728.1 Feature: domain Description: RVT_N Location: 89503-89740 bp Feature: domain Description: RVT_N Location: 89503 -89740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-90427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89791-90427 bp Feature: domain Description: YkfC Location: 90625-90781 bp Feature: domain Description: YkfC Location: 90625-90781 bp Feature: domain Description: HNH Note: nucleases Location: 90964-91102 bp Feature: domain Description: HNH Note: nucleases Location: 90964-91102 bp Feature: gene Location: 91243-91497 bp Ori: KSS74729.1 Feature: domain Description: SdhE Location: 91249-91489 bp Feature: domain Description: SdhE Location: 91249-91489 bp Feature: gene Location: 91481-91933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: LLVK01000064.1 Pseudomonas aeruginosa strain WH-SGI-V-07324 WH_SGI_V_07324_42, whole genome shotgun sequence (36345 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSS65858.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 2604 2-26810 bp Feature: gene Location: 27869-28609 bp Ori: KSS65864.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 27884 -284 75 bp Feature: gene Location: 29647-32145 bp Ori: KSS65859.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSS65861.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_21 Location: 33836-34 166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)