myRT

myRT report for GCA_001454495.1_WH-SGI-V-07325

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Seq: LLVL01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07325 WH_SGI_V_07325_13, whole genome shotgun sequence (184771 bp)
Overview 1 RT 1: 86826-91578 bp Neighborhood of RT #1 [86826, 91578] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 86826-87770 bp Ori: KSS94096.1 Feature: domain Description: YgfZ Location: 86835-87735 bp Feature: domain Description: YgfZ Location: 86835-87735 bp Feature: gene Location: 88727-89004 bp Feature: gene Location: 89091-90812 bp Ori: KSS94097.1 Feature: domain Description: RVT_N Location: 89148-89385 bp Feature: domain Description: RVT_N Location: 891 48-89385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89436-90072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89436-90072 bp Feature: domain Description: YkfC Location: 90270-90426 bp Feature: domain Description: YkfC Location: 90270-90426 bp Feature: domain Description: HNH Note: nucleases Location: 90609-90747 bp Feature: domain Description: HNH Note: nucleases Location: 90609-90747 bp Feature: gene Location: 90888-91142 bp Ori: KSS94098.1 Feature: domain Description: SdhE Location: 90894-91134 bp Feature: domain Description: SdhE Location: 90894-91 1 34 bp Feature: gene Location: 91126-91578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: LLVL01000090.1 Pseudomonas aeruginosa strain WH-SGI-V-07325 WH_SGI_V_07325_45, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSS83677.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF2 62 Location: 2 6042 -2 6810 bp Feature: gene Location: 27869-28609 bp Ori: KSS83683.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 2 7884-2 8475 bp Feature: gene Location: 29647-32145 bp Ori: KSS83678.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSS83680.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_2 1 Location: 332 93-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_2 1 Location: 33836-34166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLVL01000095.1 Pseudomonas aeruginosa strain WH-SGI-V-07325 WH_SGI_V_07325_5, whole genome shotgun sequence (259936 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83 -278 bp Feature: gene Location: 963-2231 bp Ori: KSS82434.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-183 3 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1911-213 3 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Ori: KSS82435.1 Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: LLVL01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07325 WH_SGI_V_07325_11, whole genome shotgun sequence (190961 bp)
Overview 1 RT 1: 106046-116351 bp 2 RT 2: 132609-140773 bp Neighborhood of RT #1 [106046, 116353] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [132609, 140787] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 106046-107167 bp Ori: KSS95224.1 Feature: domain Description: COG3177 Location: 106064-107156 bp Feature: domain Description: COG3177 Location: 106064 -107156 bp Feature: gene Location: 107426-107562 bp Feature: gene Location: 107890-109575 bp Ori: KSS95225.1 Feature: domain Description: RVT_N Location: 107947-108187 bp Feature: domain Description: RVT_N Location: 10794 7-108187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108235-108871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108235-108871 bp Feature: domain Description: GIIM Note: maturase Location: 108925-109156 bp Feature: domain Description: GIIM Note: maturase Location: 108925-109156 bp Feature: domain Description: HNH Note: nucleases Location: 109408-109546 bp Feature: domain Description: HNH Note: nucleases Location: 1094 08-10954 6 bp Feature: gene Location: 110656-114393 bp Ori: KSS95226.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 110764-111421 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 110764 -1114 21 bp Feature: domain Description: PRK09776 Location: 111634-112105 bp Feature: domain Description: PRK09776 Location: 111634 -112105 bp Feature: domain Description: PAS Location: 112162-112687 bp Feature: domain Description: PAS Location: 112162-112687 bp Feature: domain Description: PRK10060 Location: 112699-114343 bp Feature: domain Description: PRK10060 Location: 112699-114 34 3 bp Feature: gene Location: 114500-116353 bp Ori: KSS95227.1 Feature: domain Description: PRK05658 Location: 114512-116351 bp Feature: domain Description: PRK05658 Location: 114 512-116351 bp Feature: gene Location: 132609-133901 bp Ori: KSS95245.1 Feature: domain Description: PRK10770 Location: 132699-133893 bp Feature: domain Description: PRK10770 Location: 132699-133893 bp Feature: gene Location: 133882-136653 bp Ori: KSS95246.1 Feature: domain Description: LptD Location: 134077-136639 bp Feature: domain Description: LptD Location: 134 077-136639 bp Feature: gene Location: 136786-138498 bp Ori: KSS95247.1 Feature: domain Description: RVT_N Location: 136843-137086 bp Feature: domain Description: RVT_N Location: 13684 3-137086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137131-137767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137131-137767 bp Feature: domain Description: YkfC Location: 137977-138127 bp Feature: domain Description: YkfC Location: 137977-138127 bp Feature: domain Description: HNH Note: nucleases Location: 138304-138442 bp Feature: domain Description: HNH Note: nucleases Location: 138304 -1384 4 2 bp Feature: gene Location: 138686-138898 bp Feature: gene Location: 139771-140787 bp Ori: KSS95248.1 Feature: domain Description: COG3178 Location: 139774-140773 bp Feature: domain Description: COG3178 Location: 139774 -14 0773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )