myRT

myRT report for GCA_001454545.1_WH-SGI-V-07329

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Seq: LLVP01000025.1 Pseudomonas aeruginosa strain WH-SGI-V-07329 WH_SGI_V_07329_3, whole genome shotgun sequence (377528 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KST03539.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG31 78 Location: 501 78-51 1 77 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KST03540.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521 -52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982-541 20 bp Feature: gene Location: 54309-57080 bp Ori: KST03541.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KST03542.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK1 0770 Location: 571 51 -58345 bp Feature: gene Location: 74609-76462 bp Ori: KST03560.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74621 -76460 bp Feature: gene Location: 76569-80306 bp Ori: KST03561.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-7801 8 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK1 0060 Location: 7861 2-80256 bp Feature: gene Location: 81387-83072 bp Ori: KST03562.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81 444-81 684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 732-82368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KST03563.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG31 77 Location: 8381 3-84905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: LLVP01000037.1 Pseudomonas aeruginosa strain WH-SGI-V-07329 WH_SGI_V_07329_40, whole genome shotgun sequence (38385 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KST01512.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF2 62 Location: 2 6042 -2 6810 bp Feature: gene Location: 27869-28609 bp Ori: KST01519.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 2 7884-2 8475 bp Feature: gene Location: 29647-32145 bp Ori: KST01513.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KST01515.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_2 1 Location: 332 93-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_2 1 Location: 33836-34166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLVP01000018.1 Pseudomonas aeruginosa strain WH-SGI-V-07329 WH_SGI_V_07329_23, whole genome shotgun sequence (138768 bp)
Overview 1 RT 1: 93194-97911 bp Neighborhood of RT #1 [93194, 97946] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93194-93646 bp Feature: gene Location: 93630-93884 bp Ori: KST04891.1 Feature: domain Description: SdhE Location: 93636-93876 bp Feature: domain Description: SdhE Location: 93 63 6-93 876 bp Feature: gene Location: 93960-95681 bp Ori: KST04892.1 Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: domain Description: RVT_N Location: 94017-94254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94305-94941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 943 05-94941 bp Feature: domain Description: YkfC Location: 95139-95295 bp Feature: domain Description: YkfC Location: 9513 9-95295 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: domain Description: HNH Note: nucleases Location: 95478-95616 bp Feature: gene Location: 95768-96045 bp Feature: gene Location: 97002-97946 bp Ori: KST04893.1 Feature: domain Description: YgfZ Location: 97011-97911 bp Feature: domain Description: YgfZ Location: 97011-97911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)