myRT

myRT report for GCA_001454565.1_WH-SGI-V-07330

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Seq: LLVQ01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07330 WH_SGI_V_07330_10, whole genome shotgun sequence (260076 bp)
Overview 1 RT 1: 254307-260076 bp Neighborhood of RT #1 [254307, 260076] CHD CHD RVT-GII GIIM Feature: gene Location: 254307-255851 bp Ori: KST16216.1 Feature: domain Description: CHD Location: 254523-254937 bp Feature: domain Description: CHD Location: 254523-254937 bp Feature: domain Description: CHD Location: 255165-255654 bp Feature: domain Description: CHD Location: 2551 65-255654 bp Feature: gene Location: 257370-257696 bp Feature: gene Location: 257846-259114 bp Ori: KST16217.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258059-258716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258059-25871 6 bp Feature: domain Description: GIIM Note: maturase Location: 258794-259016 bp Feature: domain Description: GIIM Note: maturase Location: 258794-25901 6 bp Feature: gene Location: 259634-260076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLVQ01000086.1 Pseudomonas aeruginosa strain WH-SGI-V-07330 WH_SGI_V_07330_40, whole genome shotgun sequence (36345 bp)
Overview 1 RT 1: 25993-34165 bp Neighborhood of RT #1 [25993, 34359] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25993-27864 bp Ori: KST07362.1 Feature: domain Description: DUF262 Location: 26041-26809 bp Feature: domain Description: DUF2 62 Location: 2 6041-2 6809 bp Feature: gene Location: 27868-28608 bp Ori: KST07368.2 Feature: domain Description: YeeA Location: 27883-28474 bp Feature: domain Description: YeeA Location: 2 7883-2 8474 bp Feature: gene Location: 29646-32144 bp Ori: KST07363.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29649-30090 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9649-30090 bp Feature: gene Location: 32663-33220 bp Feature: gene Location: 33220-34359 bp Ori: KST07365.1 Feature: domain Description: AAA_21 Location: 33292-33361 bp Feature: domain Description: AAA_2 1 Location: 332 92 -33361 bp Feature: domain Description: AAA_21 Location: 33835-34165 bp Feature: domain Description: AAA_2 1 Location: 33835-34165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLVQ01000074.1 Pseudomonas aeruginosa strain WH-SGI-V-07330 WH_SGI_V_07330_3, whole genome shotgun sequence (377569 bp)
Overview 1 RT 1: 292654-302959 bp 2 RT 2: 319217-327381 bp Neighborhood of RT #1 [292654, 302961] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319217, 327395] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 292654-293775 bp Ori: KST09797.1 Feature: domain Description: COG3177 Location: 292672-293764 bp Feature: domain Description: COG3 177 Location: 292672-293 764 bp Feature: gene Location: 294034-294170 bp Feature: gene Location: 294498-296183 bp Ori: KST09798.1 Feature: domain Description: RVT_N Location: 294555-294795 bp Feature: domain Description: RVT_N Location: 294555-294795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294843-295479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294843 -295479 bp Feature: domain Description: GIIM Note: maturase Location: 295533-295764 bp Feature: domain Description: GIIM Note: maturase Location: 29553 3 -295764 bp Feature: domain Description: HNH Note: nucleases Location: 296016-296154 bp Feature: domain Description: HNH Note: nucleases Location: 296016-296154 bp Feature: gene Location: 297264-301001 bp Ori: KST09799.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 297372-298029 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2973 72-298029 bp Feature: domain Description: PRK09776 Location: 298242-298713 bp Feature: domain Description: PRK09776 Location: 298242-298713 bp Feature: domain Description: PAS Location: 298770-299295 bp Feature: domain Description: PAS Location: 298770-299295 bp Feature: domain Description: PRK10060 Location: 299307-300951 bp Feature: domain Description: PRK10060 Location: 2993 07-3 00951 bp Feature: gene Location: 301108-302961 bp Ori: KST09800.1 Feature: domain Description: PRK05658 Location: 301120-302959 bp Feature: domain Description: PRK05658 Location: 3 01120-3 02959 bp Feature: gene Location: 319217-320509 bp Ori: KST09818.1 Feature: domain Description: PRK10770 Location: 319307-320501 bp Feature: domain Description: PRK10770 Location: 3 193 07-3 20501 bp Feature: gene Location: 320490-323261 bp Ori: KST09819.1 Feature: domain Description: LptD Location: 320685-323247 bp Feature: domain Description: LptD Location: 3 20685-3 23 247 bp Feature: gene Location: 323394-325106 bp Ori: KST09820.1 Feature: domain Description: RVT_N Location: 323451-323694 bp Feature: domain Description: RVT_N Location: 3 23 451-3 23 694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323739-324375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 73 9-3 243 75 bp Feature: domain Description: YkfC Location: 324585-324735 bp Feature: domain Description: YkfC Location: 3 24585-3 2473 5 bp Feature: domain Description: HNH Note: nucleases Location: 324912-325050 bp Feature: domain Description: HNH Note: nucleases Location: 3 24912-3 25050 bp Feature: gene Location: 325294-325506 bp Feature: gene Location: 326379-327395 bp Ori: KST09821.1 Feature: domain Description: COG3178 Location: 326382-327381 bp Feature: domain Description: COG3 178 Location: 3 263 82-3 273 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLVQ01000059.1 Pseudomonas aeruginosa strain WH-SGI-V-07330 WH_SGI_V_07330_16, whole genome shotgun sequence (160411 bp)
Overview 1 RT 1: 68479-73196 bp Neighborhood of RT #1 [68479, 73231] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 68479-68931 bp Feature: gene Location: 68915-69169 bp Ori: KST12526.1 Feature: domain Description: SdhE Location: 68921-69161 bp Feature: domain Description: SdhE Location: 68921-69161 bp Feature: gene Location: 69245-70966 bp Ori: KST12527.1 Feature: domain Description: RVT_N Location: 69302-69539 bp Feature: domain Description: RVT_N Location: 69302-69539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69590-70226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69590-70226 bp Feature: domain Description: YkfC Location: 70424-70580 bp Feature: domain Description: YkfC Location: 704 24 -70580 bp Feature: domain Description: HNH Note: nucleases Location: 70763-70901 bp Feature: domain Description: HNH Note: nucleases Location: 70763-70901 bp Feature: gene Location: 71053-71330 bp Feature: gene Location: 72287-73231 bp Ori: KST12528.1 Feature: domain Description: YgfZ Location: 72296-73196 bp Feature: domain Description: YgfZ Location: 72296-73196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)