myRT

myRT report for GCA_001454675.1_WH-SGI-V-07287

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Seq: LLUM01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07287 WH_SGI_V_07287_4, whole genome shotgun sequence (583482 bp)
Overview 1 RT 1: 50257-58426 bp 2 RT 2: 74687-84917 bp Neighborhood of RT #1 [50257, 58434] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74687, 84917] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH INT_Rci_Hp1_C Feature: gene Location: 50257-51273 bp Feature: domain Description: COG3178 Location: 50260-51259 bp Feature: domain Description: COG31 78 Location: 50260-51 259 bp Feature: gene Location: 52146-52358 bp Feature: gene Location: 52545-54257 bp Feature: RT Description: RVT_N Location: 52602-52845 bp Feature: RT Description: RVT_N Location: 52602-52845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52890-53523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52890-53523 bp Feature: domain Description: YkfC Location: 53736-53886 bp Feature: domain Description: YkfC Location: 53736-53886 bp Feature: domain Description: HNH Note: nucleases Location: 54063-54201 bp Feature: domain Description: HNH Note: nucleases Location: 54063-54201 bp Feature: gene Location: 54390-57161 bp Feature: domain Description: LptD Location: 54735-57147 bp Feature: domain Description: LptD Location: 54735-571 47 bp Feature: gene Location: 57142-58434 bp Feature: domain Description: PRK10770 Location: 57232-58426 bp Feature: domain Description: PRK1 0770 Location: 57232-58426 bp Feature: gene Location: 74687-76540 bp Feature: domain Description: PRK05658 Location: 74699-76538 bp Feature: domain Description: PRK05658 Location: 74699-76538 bp Feature: gene Location: 76646-80383 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76754-77411 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76754-7741 1 bp Feature: domain Description: PRK09776 Location: 77624-78098 bp Feature: domain Description: PRK09776 Location: 77624-78098 bp Feature: domain Description: PAS Location: 78143-78683 bp Feature: domain Description: PAS Location: 781 43-78683 bp Feature: domain Description: PRK10060 Location: 78686-80333 bp Feature: domain Description: PRK1 0060 Location: 78686-80333 bp Feature: gene Location: 81464-83149 bp Feature: RT Description: RVT_N Location: 81521-81761 bp Feature: RT Description: RVT_N Location: 81 521 -81 761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81809-82445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 809-82445 bp Feature: domain Description: GIIM Note: maturase Location: 82499-82730 bp Feature: domain Description: GIIM Note: maturase Location: 82499-82730 bp Feature: domain Description: HNH Note: nucleases Location: 82982-83120 bp Feature: domain Description: HNH Note: nucleases Location: 82982-831 20 bp Feature: gene Location: 83452-84525 bp Feature: domain Description: INT_Rci_Hp1_C Location: 83962-84463 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 83962-84463 bp Feature: gene Location: 84573-84917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), INT_Rci_Hp1_C (cd00796)