myRT

myRT report for GCA_001454705.1_WH-SGI-V-07302

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Seq: LLUV01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07302 WH_SGI_V_07302_1, whole genome shotgun sequence (1463659 bp)
Overview 1 RT 1: 1457890-1463659 bp Neighborhood of RT #1 [1457890, 1463659] CHD CHD RVT-GII GIIM Feature: gene Location: 1457890-1459434 bp Feature: domain Description: CHD Location: 1458106-1458520 bp Feature: domain Description: CHD Location: 1 4581 06-1 458520 bp Feature: domain Description: CHD Location: 1458748-1459237 bp Feature: domain Description: CHD Location: 1 458748-1 459237 bp Feature: gene Location: 1460953-1461279 bp Feature: gene Location: 1461429-1462697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461642-1462299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 461 642-1 462299 bp Feature: domain Description: GIIM Note: maturase Location: 1462377-1462599 bp Feature: domain Description: GIIM Note: maturase Location: 1 462377-1 462599 bp Feature: gene Location: 1463217-1463659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLUV01000040.1 Pseudomonas aeruginosa strain WH-SGI-V-07302 WH_SGI_V_07302_4, whole genome shotgun sequence (418026 bp)
Overview 1 RT 1: 52009-60191 bp 2 RT 2: 76456-86753 bp Neighborhood of RT #1 [52009, 60199] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76456, 86764] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 52009-53025 bp Feature: domain Description: COG3178 Location: 52012-53011 bp Feature: domain Description: COG3178 Location: 52 012 -53011 bp Feature: gene Location: 53898-54110 bp Feature: gene Location: 54298-56010 bp Feature: RT Description: RVT_N Location: 54355-54598 bp Feature: RT Description: RVT_N Location: 54355-54598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54643-55279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54643-552 79 bp Feature: domain Description: YkfC Location: 55486-55639 bp Feature: domain Description: YkfC Location: 55486-55639 bp Feature: domain Description: HNH Note: nucleases Location: 55816-55954 bp Feature: domain Description: HNH Note: nucleases Location: 55816-55954 bp Feature: gene Location: 56143-58926 bp Feature: domain Description: LptD Location: 56338-58912 bp Feature: domain Description: LptD Location: 56338-58912 bp Feature: gene Location: 58907-60199 bp Feature: domain Description: PRK10770 Location: 58997-60191 bp Feature: domain Description: PRK10770 Location: 58997-60191 bp Feature: gene Location: 76456-78309 bp Feature: domain Description: PRK05658 Location: 76468-78307 bp Feature: domain Description: PRK05658 Location: 76468-78307 bp Feature: gene Location: 78416-82153 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 78524-79181 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 7852 4-79181 bp Feature: domain Description: PRK09776 Location: 79394-79865 bp Feature: domain Description: PRK09776 Location: 79394-79865 bp Feature: domain Description: PAS Location: 79922-80447 bp Feature: domain Description: PAS Location: 7992 2 -80447 bp Feature: domain Description: PRK10060 Location: 80456-82103 bp Feature: domain Description: PRK10060 Location: 80456-82 103 bp Feature: gene Location: 83234-84919 bp Feature: RT Description: RVT_N Location: 83291-83531 bp Feature: RT Description: RVT_N Location: 832 91-83531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83579-84215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83579-842 15 bp Feature: domain Description: GIIM Note: maturase Location: 84269-84500 bp Feature: domain Description: GIIM Note: maturase Location: 842 69-84500 bp Feature: domain Description: HNH Note: nucleases Location: 84752-84890 bp Feature: domain Description: HNH Note: nucleases Location: 84752 -84890 bp Feature: gene Location: 85247-85384 bp Feature: gene Location: 85643-86764 bp Feature: domain Description: COG3177 Location: 85661-86753 bp Feature: domain Description: COG3177 Location: 85661-86753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )