myRT

myRT report for GCA_001454785.1_WH-SGI-V-07320

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Seq: LLVH01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07320 WH_SGI_V_07320_10, whole genome shotgun sequence (260177 bp)
Overview 1 RT 1: 2-5573 bp Neighborhood of RT #1 [2, 5770] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 2-443 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: domain Description: DUF772 Location: 83-278 bp Feature: gene Location: 963-2231 bp Ori: KSS32295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 76-1 833 bp Feature: domain Description: GIIM Note: maturase Location: 1911-2133 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 1 -21 33 bp Feature: gene Location: 2381-2707 bp Feature: gene Location: 4226-5770 bp Ori: KSS32296.1 Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 4442-4856 bp Feature: domain Description: CHD Location: 5084-5573 bp Feature: domain Description: CHD Location: 5084-5573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: LLVH01000051.1 Pseudomonas aeruginosa strain WH-SGI-V-07320 WH_SGI_V_07320_2, whole genome shotgun sequence (407316 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84533 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84616] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 50175-51191 bp Ori: KSS23413.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KSS23414.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52 52 1-52 764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 809-53445 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982 -5412 0 bp Feature: gene Location: 54309-57080 bp Ori: KSS23415.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54504-57066 bp Feature: gene Location: 57061-58353 bp Ori: KSS23416.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: gene Location: 74609-76462 bp Ori: KSS23434.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 7462 1-76460 bp Feature: gene Location: 76569-80306 bp Ori: KSS23435.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612 -802 56 bp Feature: gene Location: 81387-83072 bp Ori: KSS23436.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732 -82 368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 82 42 2 -82 653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82 905-83043 bp Feature: gene Location: 83203-84372 bp Ori: OPE40667.1 Feature: domain Description: int Location: 83209-84223 bp Feature: domain Description: int Location: 832 09-842 2 3 bp Feature: gene Location: 84377-84616 bp Ori: KSS23437.1 Feature: domain Description: HTH_XRE Location: 84389-84533 bp Feature: domain Description: HTH_XRE Location: 84389-84533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: LLVH01000098.1 Pseudomonas aeruginosa strain WH-SGI-V-07320 WH_SGI_V_07320_62, whole genome shotgun sequence (7476 bp)
Overview 1 RT 1: 1987-4646 bp Neighborhood of RT #1 [1987, 6700] AAA_21 AAA_21 RVT-UG5 Feature: gene Location: 1987-3126 bp Ori: KSS09877.1 Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2059-2128 bp Feature: domain Description: AAA_21 Location: 2602-2932 bp Feature: domain Description: AAA_21 Location: 2602-293 2 bp Feature: gene Location: 3126-3683 bp Feature: gene Location: 4202-6700 bp Ori: KSS09879.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4205-4646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5