myRT

myRT report for GCA_001454805.1_WH-SGI-V-07326

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Seq: LLVM01000288.1 Pseudomonas aeruginosa strain WH-SGI-V-07326 WH_SGI_V_07326_8, whole genome shotgun sequence (274243 bp)
Overview 1 RT 1: 93193-97910 bp Neighborhood of RT #1 [93193, 97945] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93193-93645 bp Feature: gene Location: 93629-93883 bp Ori: KSS98629.1 Feature: domain Description: SdhE Location: 93635-93875 bp Feature: domain Description: SdhE Location: 93635-93875 bp Feature: gene Location: 93959-95680 bp Ori: KSS98630.1 Feature: domain Description: RVT_N Location: 94016-94253 bp Feature: domain Description: RVT_N Location: 9401 6-94253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94304-94940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94304-94940 bp Feature: domain Description: YkfC Location: 95138-95294 bp Feature: domain Description: YkfC Location: 951 38-95294 bp Feature: domain Description: HNH Note: nucleases Location: 95477-95615 bp Feature: domain Description: HNH Note: nucleases Location: 95477-9561 5 bp Feature: gene Location: 95767-96044 bp Feature: gene Location: 97001-97945 bp Ori: KSS98631.1 Feature: domain Description: YgfZ Location: 97010-97910 bp Feature: domain Description: YgfZ Location: 9701 0-9791 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: LLVM01000239.1 Pseudomonas aeruginosa strain WH-SGI-V-07326 WH_SGI_V_07326_35, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KST03855.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF2 62 Location: 2 6042 -2 6810 bp Feature: gene Location: 27869-28609 bp Ori: KST03861.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 2 7884-2 8475 bp Feature: gene Location: 29647-32145 bp Ori: KST03856.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 9650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KST03858.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_2 1 Location: 332 93-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_2 1 Location: 33836-34166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: LLVM01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07326 WH_SGI_V_07326_11, whole genome shotgun sequence (260129 bp)
Overview 1 RT 1: 254360-260129 bp Neighborhood of RT #1 [254360, 260129] CHD CHD RVT-GII GIIM Feature: gene Location: 254360-255904 bp Ori: KST24809.1 Feature: domain Description: CHD Location: 254576-254990 bp Feature: domain Description: CHD Location: 254576-254990 bp Feature: domain Description: CHD Location: 255218-255707 bp Feature: domain Description: CHD Location: 255218-255707 bp Feature: gene Location: 257423-257749 bp Feature: gene Location: 257899-259167 bp Ori: KST24810.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258112-258769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258112-258769 bp Feature: domain Description: GIIM Note: maturase Location: 258847-259069 bp Feature: domain Description: GIIM Note: maturase Location: 258847-259069 bp Feature: gene Location: 259687-260129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLVM01000223.1 Pseudomonas aeruginosa strain WH-SGI-V-07326 WH_SGI_V_07326_3, whole genome shotgun sequence (470830 bp)
Overview 1 RT 1: 50175-58345 bp 2 RT 2: 74609-84905 bp Neighborhood of RT #1 [50175, 58353] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74609, 84916] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50175-51191 bp Ori: KST05782.1 Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: domain Description: COG3178 Location: 50178-51177 bp Feature: gene Location: 52064-52276 bp Feature: gene Location: 52464-54176 bp Ori: KST05783.1 Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: domain Description: RVT_N Location: 52521-52764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-53445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52809-534 4 5 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: YkfC Location: 53655-53805 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54120 bp Feature: domain Description: HNH Note: nucleases Location: 53982-54 120 bp Feature: gene Location: 54309-57080 bp Ori: KST05784.1 Feature: domain Description: LptD Location: 54504-57066 bp Feature: domain Description: LptD Location: 54 504 -57066 bp Feature: gene Location: 57061-58353 bp Ori: KST05785.1 Feature: domain Description: PRK10770 Location: 57151-58345 bp Feature: domain Description: PRK10770 Location: 57151-5834 5 bp Feature: gene Location: 74609-76462 bp Ori: KST05803.1 Feature: domain Description: PRK05658 Location: 74621-76460 bp Feature: domain Description: PRK05658 Location: 74 621-764 60 bp Feature: gene Location: 76569-80306 bp Ori: KST05804.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76677-77334 bp Feature: domain Description: PRK09776 Location: 77547-78018 bp Feature: domain Description: PRK09776 Location: 7754 7-78018 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PAS Location: 78075-78600 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: domain Description: PRK10060 Location: 78612-80256 bp Feature: gene Location: 81387-83072 bp Ori: KST05805.1 Feature: domain Description: RVT_N Location: 81444-81684 bp Feature: domain Description: RVT_N Location: 814 4 4 -81684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81732-82368 bp Feature: domain Description: GIIM Note: maturase Location: 82422-82653 bp Feature: domain Description: GIIM Note: maturase Location: 824 22-82653 bp Feature: domain Description: HNH Note: nucleases Location: 82905-83043 bp Feature: domain Description: HNH Note: nucleases Location: 82905-8304 3 bp Feature: gene Location: 83400-83536 bp Feature: gene Location: 83795-84916 bp Ori: KST05806.1 Feature: domain Description: COG3177 Location: 83813-84905 bp Feature: domain Description: COG3177 Location: 83813-84 905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )