myRT

myRT report for GCA_001454825.1_WH-SGI-V-07327

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Seq: LLVN01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07327 WH_SGI_V_07327_13, whole genome shotgun sequence (183964 bp)
Overview 1 RT 1: 178195-183964 bp Neighborhood of RT #1 [178195, 183964] CHD CHD RVT-GII GIIM Feature: gene Location: 178195-179739 bp Ori: KSS96579.1 Feature: domain Description: CHD Location: 178411-178825 bp Feature: domain Description: CHD Location: 1 7841 1 -1 78825 bp Feature: domain Description: CHD Location: 179053-179542 bp Feature: domain Description: CHD Location: 1 79053-1 79542 bp Feature: gene Location: 181258-181584 bp Feature: gene Location: 181734-183002 bp Ori: KSS96580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181947-182604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 947-1 82604 bp Feature: domain Description: GIIM Note: maturase Location: 182682-182904 bp Feature: domain Description: GIIM Note: maturase Location: 1 82682-1 82904 bp Feature: gene Location: 183522-183964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: LLVN01000107.1 Pseudomonas aeruginosa strain WH-SGI-V-07327 WH_SGI_V_07327_30, whole genome shotgun sequence (85211 bp)
Overview 1 RT 1: 598-10601 bp 2 RT 2: 26859-35023 bp Neighborhood of RT #1 [598, 10603] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [26859, 35037] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 598-834 bp Ori: KSS87138.1 Feature: domain Description: HTH_XRE Location: 616-733 bp Feature: domain Description: HTH_XRE Location: 616-733 bp Feature: gene Location: 839-1858 bp Feature: domain Description: int Location: 845-1856 bp Feature: domain Description: int Location: 845-1856 bp Feature: gene Location: 2140-3825 bp Ori: KSS87139.1 Feature: domain Description: RVT_N Location: 2197-2437 bp Feature: domain Description: RVT_N Location: 2 197-2 437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2485-3121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 485-312 1 bp Feature: domain Description: GIIM Note: maturase Location: 3175-3406 bp Feature: domain Description: GIIM Note: maturase Location: 3175-3406 bp Feature: domain Description: HNH Note: nucleases Location: 3658-3796 bp Feature: domain Description: HNH Note: nucleases Location: 3658-3796 bp Feature: gene Location: 4906-8643 bp Ori: KSS87140.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5014-5671 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 5014-5671 bp Feature: domain Description: PRK09776 Location: 5884-6355 bp Feature: domain Description: PRK09776 Location: 5884-6355 bp Feature: domain Description: PAS Location: 6412-6937 bp Feature: domain Description: PAS Location: 6412 -6937 bp Feature: domain Description: PRK10060 Location: 6949-8593 bp Feature: domain Description: PRK10060 Location: 6949-8593 bp Feature: gene Location: 8750-10603 bp Ori: KSS87141.1 Feature: domain Description: PRK05658 Location: 8762-10601 bp Feature: domain Description: PRK05658 Location: 8762 -10601 bp Feature: gene Location: 26859-28151 bp Ori: KSS87159.1 Feature: domain Description: PRK10770 Location: 26949-28143 bp Feature: domain Description: PRK10770 Location: 2 6949-2 8143 bp Feature: gene Location: 28132-30903 bp Ori: KSS87160.1 Feature: domain Description: LptD Location: 28327-30889 bp Feature: domain Description: LptD Location: 2 832 7-30889 bp Feature: gene Location: 31036-32748 bp Ori: KSS87161.1 Feature: domain Description: RVT_N Location: 31093-31336 bp Feature: domain Description: RVT_N Location: 31093-31336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31381-32017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31381-32 017 bp Feature: domain Description: YkfC Location: 32227-32377 bp Feature: domain Description: YkfC Location: 32 2 2 7-32 377 bp Feature: domain Description: HNH Note: nucleases Location: 32554-32692 bp Feature: domain Description: HNH Note: nucleases Location: 32 554-32 692 bp Feature: gene Location: 32936-33148 bp Feature: gene Location: 34021-35037 bp Ori: KSS87162.1 Feature: domain Description: COG3178 Location: 34024-35023 bp Feature: domain Description: COG3178 Location: 3402 4-3502 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: LLVN01000024.1 Pseudomonas aeruginosa strain WH-SGI-V-07327 WH_SGI_V_07327_12, whole genome shotgun sequence (184875 bp)
Overview 1 RT 1: 87038-91790 bp Neighborhood of RT #1 [87038, 91790] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 87038-87982 bp Ori: KSS97394.1 Feature: domain Description: YgfZ Location: 87047-87947 bp Feature: domain Description: YgfZ Location: 87047-87947 bp Feature: gene Location: 88939-89216 bp Feature: gene Location: 89303-91024 bp Ori: KSS97395.1 Feature: domain Description: RVT_N Location: 89360-89597 bp Feature: domain Description: RVT_N Location: 893 60-89597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89648-90284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89648-90284 bp Feature: domain Description: YkfC Location: 90482-90638 bp Feature: domain Description: YkfC Location: 90482-9063 8 bp Feature: domain Description: HNH Note: nucleases Location: 90821-90959 bp Feature: domain Description: HNH Note: nucleases Location: 90821-90959 bp Feature: gene Location: 91100-91354 bp Ori: KSS97396.1 Feature: domain Description: SdhE Location: 91106-91346 bp Feature: domain Description: SdhE Location: 91106-913 46 bp Feature: gene Location: 91338-91790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: LLVN01000121.1 Pseudomonas aeruginosa strain WH-SGI-V-07327 WH_SGI_V_07327_43, whole genome shotgun sequence (36346 bp)
Overview 1 RT 1: 25994-34166 bp Neighborhood of RT #1 [25994, 34360] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25994-27865 bp Ori: KSS83944.1 Feature: domain Description: DUF262 Location: 26042-26810 bp Feature: domain Description: DUF262 Location: 2604 2-26810 bp Feature: gene Location: 27869-28609 bp Ori: KSS83950.2 Feature: domain Description: YeeA Location: 27884-28475 bp Feature: domain Description: YeeA Location: 27884 -284 75 bp Feature: gene Location: 29647-32145 bp Ori: KSS83945.2 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29650-30091 bp Feature: gene Location: 32664-33221 bp Feature: gene Location: 33221-34360 bp Ori: KSS83947.1 Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33293-33362 bp Feature: domain Description: AAA_21 Location: 33836-34166 bp Feature: domain Description: AAA_21 Location: 33836-34 166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)