myRT

myRT report for GCA_001456025.1_ASM145602v1

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Seq: LMTZ01000084.1 Mastigocoleus testarum BC008 Contig-19, whole genome shotgun sequence (160973 bp)
Overview 1 RT 1: 129563-138695 bp Neighborhood of RT #1 [129563, 138739] TPR PRK07198 RVT_N RVT-GII GIIM HNHc SLH OprB MR_like Feature: gene Location: 129563-130036 bp Feature: domain Description: TPR Location: 129701-129971 bp Feature: domain Description: TPR Location: 1 29701 -1 29971 bp Feature: gene Location: 130316-131575 bp Feature: domain Description: PRK07198 Location: 130331-131567 bp Feature: domain Description: PRK071 98 Location: 1 30331 -1 31 567 bp Feature: gene Location: 132729-134462 bp Feature: RT Description: RVT_N Location: 132774-133014 bp Feature: RT Description: RVT_N Location: 1 32774-1 3301 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133068-133707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 33068-1 33707 bp Feature: domain Description: GIIM Note: maturase Location: 133782-134013 bp Feature: domain Description: GIIM Note: maturase Location: 1 33782-1 3401 3 bp Feature: domain Description: HNHc Note: nucleases Location: 134214-134376 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3421 4-1 34376 bp Feature: gene Location: 134858-136489 bp Feature: domain Description: SLH Location: 135068-135194 bp Feature: domain Description: SLH Location: 1 35068-1 351 94 bp Feature: domain Description: OprB Location: 135266-136487 bp Feature: domain Description: OprB Location: 1 35266-1 36487 bp Feature: gene Location: 137576-138739 bp Feature: domain Description: MR_like Location: 137639-138695 bp Feature: domain Description: MR_like Location: 1 37639-1 38695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), PRK07198 (GTP cyclohydrolase II), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SLH (pfam00395), OprB (pfam04966), MR_like (cd03316)

Seq: LMTZ01000111.1 Mastigocoleus testarum BC008 Contig-43, whole genome shotgun sequence (98881 bp)
Overview 1 RT 1: 21801-26755 bp Neighborhood of RT #1 [21801, 26799] RVT_N RVT-GII GIIM HNHc SLC6sbd_u1 Feature: gene Location: 21801-22061 bp Feature: gene Location: 23075-24826 bp Feature: RT Description: RVT_N Location: 23111-23357 bp Feature: RT Description: RVT_N Location: 2 3111-2 3357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23399-24113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3399-2 4113 bp Feature: domain Description: GIIM Note: maturase Location: 24212-24446 bp Feature: domain Description: GIIM Note: maturase Location: 2 42 12 -2 4446 bp Feature: domain Description: HNHc Note: nucleases Location: 24638-24800 bp Feature: domain Description: HNHc Note: nucleases Location: 2 4638-2 4800 bp Feature: gene Location: 24891-25220 bp Feature: gene Location: 25327-26799 bp Feature: domain Description: SLC6sbd_u1 Location: 25336-26755 bp Feature: domain Description: SLC6sbd_u1 Location: 2 5336-2 6755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SLC6sbd_u1 (cd10334)

Seq: LMTZ01000004.1 Mastigocoleus testarum BC008 Contig-101, whole genome shotgun sequence (42573 bp)
Overview 1 RT 1: 33768-40400 bp Neighborhood of RT #1 [33768, 40400] arc_metj RVT_N RVT-GII GIIM McrA Acetyltransf_1 Feature: gene Location: 33768-34736 bp Feature: gene Location: 34851-35117 bp Feature: domain Description: arc_metj Location: 34989-35106 bp Feature: domain Description: arc_metj Location: 3 4989-3 5106 bp Feature: gene Location: 35767-37494 bp Feature: RT Description: RVT_N Location: 35797-36043 bp Feature: RT Description: RVT_N Location: 3 5797-3 6043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36157-36814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6157-3 6814 bp Feature: domain Description: GIIM Note: maturase Location: 36922-37156 bp Feature: domain Description: GIIM Note: maturase Location: 3 6922-3 7156 bp Feature: domain Description: McrA Location: 37240-37492 bp Feature: domain Description: McrA Location: 3 7240-3 7492 bp Feature: gene Location: 38726-39820 bp Feature: domain Description: Acetyltransf_1 Location: 38819-39101 bp Feature: domain Description: Acetyltransf_1 Location: 3 8819-3 9101 bp Feature: gene Location: 40206-40400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Acetyltransf_1 (pfam00583)

Seq: LMTZ01000005.1 Mastigocoleus testarum BC008 Contig-102, whole genome shotgun sequence (42407 bp)
Overview 1 RT 1: 33615-40247 bp Neighborhood of RT #1 [33615, 40247] arc_metj RVT_N RVT-GII GIIM McrA Acetyltransf_1 Feature: gene Location: 33615-34583 bp Feature: gene Location: 34698-34964 bp Feature: domain Description: arc_metj Location: 34836-34953 bp Feature: domain Description: arc_metj Location: 34 836-34 953 bp Feature: gene Location: 35614-37341 bp Feature: RT Description: RVT_N Location: 35644-35890 bp Feature: RT Description: RVT_N Location: 3564 4 -35890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36004-36661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36004 -36661 bp Feature: domain Description: GIIM Note: maturase Location: 36769-37003 bp Feature: domain Description: GIIM Note: maturase Location: 36769-37003 bp Feature: domain Description: McrA Location: 37087-37339 bp Feature: domain Description: McrA Location: 37087-37339 bp Feature: gene Location: 38573-39667 bp Feature: domain Description: Acetyltransf_1 Location: 38666-38948 bp Feature: domain Description: Acetyltransf_1 Location: 38666-3894 8 bp Feature: gene Location: 40053-40247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Acetyltransf_1 (pfam00583)

Seq: LMTZ01000096.1 Mastigocoleus testarum BC008 Contig-3, whole genome shotgun sequence (299865 bp)
Overview 1 RT 1: 193423-198539 bp Neighborhood of RT #1 [193423, 198667] DUF1400 COG4188 PDDEXK_1 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 193423-195105 bp Feature: domain Description: DUF1400 Location: 193504-193879 bp Feature: domain Description: DUF1400 Location: 1935 04-193879 bp Feature: domain Description: COG4188 Location: 193951-195064 bp Feature: domain Description: COG4188 Location: 19395 1-195 064 bp Feature: gene Location: 196049-196861 bp Feature: domain Description: PDDEXK_1 Location: 196079-196775 bp Feature: domain Description: PDDEXK_1 Location: 196079-196775 bp Feature: gene Location: 196874-198667 bp Feature: RT Description: RVT_N Location: 196907-197153 bp Feature: RT Description: RVT_N Location: 196907-19715 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197195-197873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197195 -197873 bp Feature: domain Description: GIIM Note: maturase Location: 197981-198206 bp Feature: domain Description: GIIM Note: maturase Location: 197981-198206 bp Feature: domain Description: HNHc Note: nucleases Location: 198404-198539 bp Feature: domain Description: HNHc Note: nucleases Location: 198404-1985 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1400 (pfam07176), COG4188 (Predicted dienelactone hydrolase ), PDDEXK_1 (pfam12705), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)