myRT

myRT report for GCA_001458175.1_S.marinaCECT7688_Velvet_Prokka

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Seq: CYPW01000007.1 Shimia marina genome assembly S.marinaCECT7688_Velvet_Prokka, scaffold 0007, whole genome shotgun sequence (37568 bp)
Overview 1 RT 1: 15293-20128 bp Neighborhood of RT #1 [15293, 20280] DUF4177 TrbL RVT-Retrons HTH_XRE PRK13850 Feature: gene Location: 15293-15475 bp Ori: CUH51686.1 Feature: domain Description: DUF4177 Location: 15299-15416 bp Feature: domain Description: DUF41 77 Location: 1 5299-1 541 6 bp Feature: gene Location: 15490-16488 bp Ori: CUH51687.1 Feature: domain Description: TrbL Location: 15607-16252 bp Feature: domain Description: TrbL Location: 1 5607-1 6252 bp Feature: gene Location: 16547-17488 bp Ori: CUH51688.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16766-17282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6766-1 7282 bp Feature: gene Location: 17469-17774 bp Ori: CUH51689.1 Feature: domain Description: HTH_XRE Location: 17481-17643 bp Feature: domain Description: HTH_XRE Location: 1 7481 -1 7643 bp Feature: gene Location: 18388-20280 bp Ori: CUH51690.1 Gene: traG_1 Feature: domain Description: PRK13850 Location: 18430-20128 bp Feature: domain Description: PRK1 3850 Location: 1 8430-201 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4177 (pfam13783), TrbL (pfam04610), RVT-Retrons, HTH_XRE (smart00530), PRK13850 (type IV secretion system protein VirD4; Provisional)

Seq: CYPW01000011.1 Shimia marina genome assembly S.marinaCECT7688_Velvet_Prokka, scaffold 0011, whole genome shotgun sequence (63392 bp)
Overview 1 RT 1: 89-5441 bp Neighborhood of RT #1 [89, 5458] RVT-UG13 AcnB hmuV Feature: gene Location: 89-1159 bp Ori: CUH52013.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 497-968 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 497-968 bp Feature: gene Location: 1585-4374 bp Ori: CUH52014.1 Gene: acnB Feature: domain Description: AcnB Location: 1594-4318 bp Feature: domain Description: AcnB Location: 1594-4318 bp Feature: gene Location: 4688-5458 bp Ori: CUH52015.1 Gene: hmuV Feature: domain Description: hmuV Location: 4694-5441 bp Feature: domain Description: hmuV Location: 4694-5441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13, AcnB (COG1049), hmuV (PRK13548)