myRT

myRT report for GCA_001458455.1_Assembly_of_Aphanizomenon_ovalisporum

Download annotations/find similar RTs

Seq: CDHJ01000036.1 Aphanizomenon ovalisporum genome assembly Assembly of Aphanizomenon ovalisporum, contig 36, whole genome shotgun sequence (135774 bp)
Overview 1 RT 1: 6093-12244 bp Neighborhood of RT #1 [6093, 12252] DppC KOG0404 TRX_NTR RVT_N RVT-GII GIIM PRK13612 MoaB Feature: gene Location: 6093-6992 bp Feature: domain Description: DppC Location: 6150-6969 bp Feature: domain Description: DppC Location: 61 50-6969 bp Feature: gene Location: 7204-8424 bp Feature: domain Description: KOG0404 Location: 7207-7999 bp Feature: domain Description: KOG0404 Location: 7207-7999 bp Feature: domain Description: TRX_NTR Location: 8125-8413 bp Feature: domain Description: TRX_NTR Location: 81 25-841 3 bp Feature: gene Location: 8527-10279 bp Feature: RT Description: RVT_N Location: 8611-8857 bp Feature: RT Description: RVT_N Location: 861 1 -8857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8902-9583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8902-9583 bp Feature: domain Description: GIIM Note: maturase Location: 9682-9916 bp Feature: domain Description: GIIM Note: maturase Location: 9682-991 6 bp Feature: gene Location: 11274-11612 bp Feature: domain Description: PRK13612 Location: 11280-11604 bp Feature: domain Description: PRK1 361 2 Location: 1 1 280-1 1 604 bp Feature: gene Location: 11749-12252 bp Feature: domain Description: MoaB Location: 11785-12244 bp Feature: domain Description: MoaB Location: 1 1 785-1 2244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13612 (photosystem II reaction center protein Psb28; Provisional), MoaB (COG0521), DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CDHJ01000029.1 Aphanizomenon ovalisporum genome assembly Assembly of Aphanizomenon ovalisporum, contig 29, whole genome shotgun sequence (143351 bp)
Overview 1 RT 1: 94640-102892 bp Neighborhood of RT #1 [94640, 102966] RRM_HP0827_like RTPR RVT_N RVT-GII GIIM RTPR LptD DUF3769 Feature: gene Location: 94640-94927 bp Feature: domain Description: RRM_HP0827_like Location: 94646-94877 bp Feature: domain Description: RRM_HP082 7_like Location: 94646-94877 bp Feature: gene Location: 95699-97627 bp Feature: domain Description: RTPR Location: 95702-97604 bp Feature: domain Description: RTPR Location: 95702 -97604 bp Feature: gene Location: 97634-99385 bp Feature: RT Description: RVT_N Location: 97643-97889 bp Feature: RT Description: RVT_N Location: 97643-97889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97913-98597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97913-98597 bp Feature: domain Description: GIIM Note: maturase Location: 98696-98930 bp Feature: domain Description: GIIM Note: maturase Location: 98696-98930 bp Feature: gene Location: 100045-100434 bp Feature: domain Description: RTPR Location: 100069-100417 bp Feature: domain Description: RTPR Location: 100069-100417 bp Feature: gene Location: 100843-102966 bp Feature: domain Description: LptD Location: 101089-101365 bp Feature: domain Description: LptD Location: 101089-101365 bp Feature: domain Description: DUF3769 Location: 101566-102892 bp Feature: domain Description: DUF3769 Location: 101566-102 892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), RRM_HP0827_like (cd12399), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CDHJ01000144.1 Aphanizomenon ovalisporum genome assembly Assembly of Aphanizomenon ovalisporum, contig 144, whole genome shotgun sequence (84975 bp)
Overview 1 RT 1: 44899-53547 bp Neighborhood of RT #1 [44899, 53558] TerY PerM RVT_N RVT-GII GIIM HNH WD40 WD40 WD40 WD40 WD40 WD40 Feature: gene Location: 44899-45573 bp Feature: domain Description: TerY Location: 44953-45568 bp Feature: domain Description: TerY Location: 44953 -45568 bp Feature: gene Location: 46518-47666 bp Feature: domain Description: PerM Location: 46533-47532 bp Feature: domain Description: PerM Location: 4653 3 -4753 2 bp Feature: gene Location: 48458-50369 bp Feature: RT Description: RVT_N Location: 48527-48773 bp Feature: RT Description: RVT_N Location: 48527-48773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48815-49484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48815-49484 bp Feature: domain Description: GIIM Note: maturase Location: 49589-49820 bp Feature: domain Description: GIIM Note: maturase Location: 49589-49820 bp Feature: domain Description: HNH Note: nucleases Location: 50045-50183 bp Feature: domain Description: HNH Note: nucleases Location: 50045-50183 bp Feature: gene Location: 50329-50427 bp Feature: gene Location: 51786-53558 bp Feature: domain Description: WD40 Location: 52617-52749 bp Feature: domain Description: WD40 Location: 52617-52749 bp Feature: domain Description: WD40 Location: 52815-52893 bp Feature: domain Description: WD40 Location: 52815-52893 bp Feature: domain Description: WD40 Location: 52917-53022 bp Feature: domain Description: WD40 Location: 52917-53 022 bp Feature: domain Description: WD40 Location: 53187-53295 bp Feature: domain Description: WD40 Location: 53 187-53 295 bp Feature: domain Description: WD40 Location: 53307-53421 bp Feature: domain Description: WD40 Location: 53 3 07-53 421 bp Feature: domain Description: WD40 Location: 53433-53547 bp Feature: domain Description: WD40 Location: 53 43 3 -53 547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerY (COG4245), PerM (COG0628), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), WD40 (smart00320)

Seq: CDHJ01000235.1 Aphanizomenon ovalisporum genome assembly Assembly of Aphanizomenon ovalisporum, contig 235, whole genome shotgun sequence (2371 bp)
Overview 1 RT 1: 546-2028 bp Neighborhood of RT #1 [546, 2356] RVT_N RVT-GII YkfC Feature: gene Location: 546-2356 bp Feature: RT Description: RVT_N Location: 615-861 bp Feature: RT Description: RVT_N Location: 615-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921-1581 bp Feature: domain Description: YkfC Location: 1839-2028 bp Feature: domain Description: YkfC Location: 1839-2028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)