myRT

myRT report for GCA_001458815.1_CBut

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Seq: CBYK010000001.1 Clostridium butyricum WGS project CBYK000000000 data, strain NEC8, contig 00001, whole genome shotgun sequence (798411 bp)
Overview 1 RT 1: 465738-470184 bp Neighborhood of RT #1 [465738, 470184] RVT-UG24 Feature: gene Location: 465738-466076 bp Feature: gene Location: 466149-466310 bp Feature: gene Location: 466300-467988 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 466807-467287 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 466807-467287 bp Feature: gene Location: 468249-469559 bp Feature: gene Location: 469966-470184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24

Seq: CBYK010000006.1 Clostridium butyricum WGS project CBYK000000000 data, strain NEC8, contig 00006, whole genome shotgun sequence (329894 bp)
Overview 1 RT 1: 138909-143700 bp Neighborhood of RT #1 [138909, 143700] InsE HNHc RVT-GII RVT-GII Rho_N SEC-C Feature: gene Location: 138909-139232 bp Feature: domain Description: InsE Location: 139005-139224 bp Feature: domain Description: InsE Location: 139005-1392 2 4 bp Feature: gene Location: 139251-139901 bp Feature: domain Description: HNHc Note: nucleases Location: 139653-139791 bp Feature: domain Description: HNHc Note: nucleases Location: 139653-139791 bp Feature: gene Location: 140008-140238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140017-140185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140017-140185 bp Feature: gene Location: 140439-140933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140634-140901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140634-140901 bp Feature: gene Location: 141961-143055 bp Feature: domain Description: Rho_N Location: 142012-142129 bp Feature: domain Description: Rho_N Location: 142 012 -142 12 9 bp Feature: domain Description: SEC-C Location: 142999-143053 bp Feature: domain Description: SEC-C Location: 142 999-143053 bp Feature: gene Location: 143254-143700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HNHc (smart00507), RVT-GII, Rho_N (smart00959), SEC-C (pfam02810)

Seq: CBYK010000008.1 Clostridium butyricum WGS project CBYK000000000 data, strain NEC8, contig 00008, whole genome shotgun sequence (249053 bp)
Overview 1 RT 1: 93869-99550 bp 2 RT 2: 158731-162615 bp Neighborhood of RT #1 [93869, 99550] MarR ADA RVT-Retrons SWIM Neighborhood of RT #2 [158731, 162615] FadR HNHc RVT-GII Feature: gene Location: 93869-94312 bp Feature: domain Description: MarR Location: 93926-94301 bp Feature: domain Description: MarR Location: 93 926-943 01 bp Feature: gene Location: 94659-95651 bp Feature: domain Description: ADA Location: 94674-95643 bp Feature: domain Description: ADA Location: 94674-95643 bp Feature: gene Location: 96474-97412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96774-97407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96774-97407 bp Feature: gene Location: 97743-97904 bp Feature: domain Description: SWIM Location: 97752-97824 bp Feature: domain Description: SWIM Location: 97752-97824 bp Feature: gene Location: 97934-99550 bp Feature: gene Location: 158731-159321 bp Feature: domain Description: FadR Location: 158734-159310 bp Feature: domain Description: FadR Location: 15873 4-1593 10 bp Feature: gene Location: 159479-160129 bp Feature: domain Description: HNHc Note: nucleases Location: 159881-160019 bp Feature: domain Description: HNHc Note: nucleases Location: 159881-160019 bp Feature: gene Location: 160152-160466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160161-160341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160161-1603 41 bp Feature: gene Location: 161001-161162 bp Feature: gene Location: 162049-162615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), ADA (cd01320), RVT-Retrons, SWIM (pfam04434), FadR (COG2186), HNHc (smart00507), RVT-GII

Seq: CBYK010000014.1 Clostridium butyricum WGS project CBYK000000000 data, strain NEC8, contig 00014, whole genome shotgun sequence (31872 bp)
Overview 1 RT 1: 3868-9227 bp Neighborhood of RT #1 [3868, 9227] LZ_Tnp_IS66 zf-IS66 InsE RVT-GII HNHc RVT-GII Transposase_mut Feature: gene Location: 3868-4500 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4012-4225 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4 012-4 225 bp Feature: domain Description: zf-IS66 Location: 4252-4381 bp Feature: domain Description: zf-IS66 Location: 4 252-4 381 bp Feature: gene Location: 5355-5678 bp Feature: domain Description: InsE Location: 5451-5670 bp Feature: domain Description: InsE Location: 54 51-5670 bp Feature: gene Location: 5697-6683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5706-5883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5706-5883 bp Feature: domain Description: HNHc Note: nucleases Location: 6435-6573 bp Feature: domain Description: HNHc Note: nucleases Location: 64 35-6573 bp Feature: gene Location: 6884-7378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7079-7346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7079-734 6 bp Feature: gene Location: 8522-8704 bp Feature: domain Description: Transposase_mut Location: 8573-8702 bp Feature: domain Description: Transposase_mut Location: 8573-8702 bp Feature: gene Location: 9012-9227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), InsE (COG2963), RVT-GII, HNHc (smart00507), Transposase_mut (pfam00872)