myRT

myRT report for GCA_001461035.1_ASM146103v1

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Seq: LNAM01000035.1 Acetivibrio ethanolgignens strain ACET-33324 ACET-33324.Scaf13, whole genome shotgun sequence (68633 bp)
Overview 1 RT 1: 15304-24845 bp Neighborhood of RT #1 [15304, 25312] Methyltransf_31 PRK13351 PRK13351 RVT-GII HNHc VirD4 DnaG DUF3991 Toprim_2 AAA_25 Feature: gene Location: 15304-16071 bp Ori: KSV60165.1 Feature: domain Description: Methyltransf_31 Location: 15505-15829 bp Feature: domain Description: Methyltransf_31 Location: 1 5505-1 5829 bp Feature: gene Location: 16122-18041 bp Ori: KSV60166.1 Feature: domain Description: PRK13351 Location: 16125-16590 bp Feature: domain Description: PRK1 3351 Location: 1 61 25-1 6590 bp Feature: domain Description: PRK13351 Location: 16647-17964 bp Feature: domain Description: PRK1 3351 Location: 1 6647-1 7964 bp Feature: gene Location: 18855-20741 bp Ori: KSV60167.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19188-19926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 88-1 9926 bp Feature: domain Description: HNHc Note: nucleases Location: 20472-20625 bp Feature: domain Description: HNHc Note: nucleases Location: 20472-20625 bp Feature: gene Location: 21834-23324 bp Feature: domain Description: VirD4 Location: 21951-23205 bp Feature: domain Description: VirD4 Location: 21 951 -23205 bp Feature: gene Location: 23411-25312 bp Ori: KSV60168.1 Feature: domain Description: DnaG Location: 23570-23669 bp Feature: domain Description: DnaG Location: 23570-23669 bp Feature: domain Description: DUF3991 Location: 23753-23960 bp Feature: domain Description: DUF3991 Location: 23753-23960 bp Feature: domain Description: Toprim_2 Location: 23984-24251 bp Feature: domain Description: Toprim_2 Location: 23984-24251 bp Feature: domain Description: AAA_25 Location: 24353-24845 bp Feature: domain Description: AAA_25 Location: 24353-24845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_31 (pfam13847), PRK13351 (elongation factor G-like protein), RVT-GII, HNHc (smart00507), VirD4 (COG3505), DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481)

Seq: LNAM01000218.1 Acetivibrio ethanolgignens strain ACET-33324 ACET-33324.Scaf89, whole genome shotgun sequence (9726 bp)
Overview 1 RT 1: 293-5608 bp Neighborhood of RT #1 [293, 5652] RVT-DGRs CHB_HEX_C_1 LRR_3 COG2865 Feature: gene Location: 293-661 bp Ori: KSV57511.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 311-407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 311-407 bp Feature: gene Location: 642-3860 bp Feature: domain Description: CHB_HEX_C_1 Location: 2433-2670 bp Feature: domain Description: CHB_HEX_C_1 Location: 2 433-2 670 bp Feature: domain Description: LRR_3 Location: 3438-3834 bp Feature: domain Description: LRR_3 Location: 3438-3834 bp Feature: gene Location: 4210-5652 bp Ori: KSV57512.1 Feature: domain Description: COG2865 Location: 4267-5608 bp Feature: domain Description: COG2 865 Location: 42 67-5608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, CHB_HEX_C_1 (pfam13290), LRR_3 (sd00036), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: LNAM01000079.1 Acetivibrio ethanolgignens strain ACET-33324 ACET-33324.Scaf17, whole genome shotgun sequence (57995 bp)
Overview 1 RT 1: 53160-56819 bp Neighborhood of RT #1 [53160, 56819] HTH_26 RVT-GII GIIM Feature: gene Location: 53160-53396 bp Feature: gene Location: 53536-53769 bp Ori: KSV59884.1 Feature: domain Description: HTH_26 Location: 53566-53749 bp Feature: domain Description: HTH_26 Location: 53 566-53 749 bp Feature: gene Location: 53837-55141 bp Ori: KSV59885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54038-54656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5403 8-54656 bp Feature: domain Description: GIIM Note: maturase Location: 54710-54926 bp Feature: domain Description: GIIM Note: maturase Location: 54710-54926 bp Feature: gene Location: 55684-56064 bp Feature: gene Location: 56082-56819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_26 (pfam13443), RVT-GII, GIIM (pfam08388)