myRT

myRT report for GCA_001461695.1_ASM146169v1

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Seq: AUTC01000014.1 Sinorhizobium fredii USDA 205 contig110, whole genome shotgun sequence (11371 bp)
Overview 1 RT 1: 6070-10913 bp Neighborhood of RT #1 [6070, 11275] COG2192 fkbM_fam RVT-GII Feature: gene Location: 6070-7863 bp Feature: domain Description: COG2192 Location: 6094-7492 bp Feature: domain Description: COG21 92 Location: 6094-7492 bp Feature: gene Location: 8030-8755 bp Feature: domain Description: fkbM_fam Location: 8177-8624 bp Feature: domain Description: fkbM_fam Location: 81 77-8624 bp Feature: gene Location: 10394-11275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10409-10913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0409-1 091 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG2192 (Predicted carbamoyl transferase, NodU family ), fkbM_fam (TIGR01444)

Seq: AUTC01000110.1 Sinorhizobium fredii USDA 205 contig21, whole genome shotgun sequence (125797 bp)
Overview 1 RT 1: 1673-5419 bp Neighborhood of RT #1 [1673, 5520] RVT-CRISPR-like RVT-CRISPR-like HTH_17 XerC Feature: gene Location: 1673-1813 bp Feature: gene Location: 1887-2099 bp Feature: gene Location: 2764-3873 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2953-3088 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 953-3088 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3229-3424 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 32 2 9-342 4 bp Feature: gene Location: 3915-4349 bp Feature: domain Description: HTH_17 Location: 4035-4173 bp Feature: domain Description: HTH_17 Location: 4035-4173 bp Feature: gene Location: 4324-5520 bp Feature: domain Description: XerC Location: 4579-5419 bp Feature: domain Description: XerC Location: 4579-5419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, HTH_17 (pfam12728), XerC (COG4973)

Seq: AUTC01000027.1 Sinorhizobium fredii USDA 205 contig122, whole genome shotgun sequence (6696 bp)
Overview 1 RT 1: 1-1784 bp Neighborhood of RT #1 [1, 2164] HTH_21 RVT-GII Feature: gene Location: 1-343 bp Feature: gene Location: 343-648 bp Feature: domain Description: HTH_21 Location: 394-529 bp Feature: domain Description: HTH_21 Location: 3 94-529 bp Feature: gene Location: 839-2164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094-1784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII