myRT

myRT report for GCA_001462225.1_ASM146222v1

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Seq: LIUH01000051.1 Fibrobacteria bacterium GUT31 contig_1739, whole genome shotgun sequence (3065 bp)
Overview 1 RT 1: 1-3001 bp Neighborhood of RT #1 [1, 3001] RVT-UNC zf-RVT Feature: gene Location: 1-2742 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 931-1567 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 931 -1 567 bp Feature: domain Description: zf-RVT Location: 2263-2470 bp Feature: domain Description: zf-RVT Location: 2263-2470 bp Feature: gene Location: 2873-3001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG11(RVT-UNC), zf-RVT (pfam13966)

Seq: LIUH01000109.1 Fibrobacteria bacterium GUT31 contig_29617, whole genome shotgun sequence (6927 bp)
Overview 1 RT 1: 76-6642 bp Neighborhood of RT #1 [76, 6851] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Baculo_F Feature: gene Location: 76-384 bp Feature: gene Location: 1504-4728 bp Feature: domain Description: retropepsin_like Location: 1522-1777 bp Feature: domain Description: retropepsin_like Location: 152 2 -1777 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2833-2974 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 833-2 974 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3289-3637 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 32 89-3637 bp Feature: domain Description: Integrase_H2C2 Location: 3685-3850 bp Feature: domain Description: Integrase_H2 C2 Location: 3685-3850 bp Feature: domain Description: rve Location: 3901-4237 bp Feature: domain Description: rve Location: 3901-42 37 bp Feature: gene Location: 5484-6851 bp Feature: domain Description: Baculo_F Location: 5796-6642 bp Feature: domain Description: Baculo_F Location: 5796-6642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-UG7/RVT-DGRs/RVT-UG17(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), Baculo_F (pfam12259)

Seq: LIUH01000119.1 Fibrobacteria bacterium GUT31 contig_3329, whole genome shotgun sequence (38581 bp)
Overview 1 RT 1: 17012-22212 bp Neighborhood of RT #1 [17012, 22214] DUF4065 Fib_succ_major RVT-DGRs Avd_like Fib_succ_major Feature: gene Location: 17012-17605 bp Feature: domain Description: DUF4065 Location: 17111-17423 bp Feature: domain Description: DUF4065 Location: 17111-17423 bp Feature: gene Location: 17583-18008 bp Feature: gene Location: 18020-19261 bp Feature: domain Description: Fib_succ_major Location: 18047-18233 bp Feature: domain Description: Fib_succ_major Location: 18047-1823 3 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18464-19133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18464-1913 3 bp Feature: gene Location: 19289-20098 bp Feature: domain Description: Avd_like Location: 19688-19985 bp Feature: domain Description: Avd_like Location: 19688-19985 bp Feature: gene Location: 20232-22214 bp Feature: domain Description: Fib_succ_major Location: 21606-22212 bp Feature: domain Description: Fib_succ_major Location: 21606-22212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4065 (pfam13274), Fib_succ_major (TIGR02145), RVT-DGRs, Avd_like (cd16376)

Seq: LIUH01000151.1 Fibrobacteria bacterium GUT31 contig_47562, whole genome shotgun sequence (4570 bp)
Overview 1 RT 1: 1-3193 bp Neighborhood of RT #1 [1, 3453] RVT-GII HPT Feature: gene Location: 1-198 bp Feature: gene Location: 246-719 bp Feature: gene Location: 1191-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440-2103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 0-2103 bp Feature: gene Location: 2788-3453 bp Feature: domain Description: HPT Location: 2956-3193 bp Feature: domain Description: HPT Location: 2956-3193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HPT (smart00073)