myRT

myRT report for GCA_001462925.1_ASM146292v1

Download annotations/find similar RTs

Seq: LNHL01000249.1 Escherichia coli strain 50579417 contig96, whole genome shotgun sequence (11122 bp)
Overview 1 RT 1: 5197-9470 bp Neighborhood of RT #1 [5197, 9478] umuC PRK10276 RVT-GII PRK09812 MazE Feature: gene Location: 5197-6462 bp Ori: KSX48729.1 Feature: domain Description: umuC Location: 5203-6448 bp Feature: domain Description: umuC Location: 5203-6448 bp Feature: gene Location: 6450-6884 bp Ori: KSX48730.1 Feature: domain Description: PRK10276 Location: 6498-6861 bp Feature: domain Description: PRK1 0276 Location: 6498-6861 bp Feature: gene Location: 7286-8770 bp Ori: KSX48731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7688-8378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7688-8378 bp Feature: gene Location: 8887-9219 bp Ori: KSX48732.1 Feature: domain Description: PRK09812 Location: 8893-9214 bp Feature: domain Description: PRK0981 2 Location: 8893-921 4 bp Feature: gene Location: 9221-9478 bp Ori: KSX48733.1 Feature: domain Description: MazE Location: 9230-9470 bp Feature: domain Description: MazE Location: 9230-9470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PRK09812 (type II toxin-antitoxin system ChpB family toxin), MazE (COG2336)

Seq: LNHL01000062.1 Escherichia coli strain 50579417 contig154, whole genome shotgun sequence (46373 bp)
Overview 1 RT 1: 22204-28235 bp Neighborhood of RT #1 [22204, 28372] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22204-22344 bp Ori: KSX67894.1 Feature: domain Description: SfsB Location: 22213-22285 bp Feature: domain Description: SfsB Location: 2 2 2 13-2 2 2 85 bp Feature: gene Location: 22341-22811 bp Feature: gene Location: 23158-26367 bp Ori: KSX67896.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23686-24175 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3686-2 4175 bp Feature: domain Description: nitrilase Location: 25681-26278 bp Feature: domain Description: nitrilase Location: 2 5681-2 62 78 bp Feature: gene Location: 26662-27465 bp Ori: KSX67897.1 Feature: domain Description: AbiEi_3_N Location: 26695-26956 bp Feature: domain Description: AbiEi_3_N Location: 2 6695-2 6956 bp Feature: domain Description: AbiEi_3 Location: 26968-27424 bp Feature: domain Description: AbiEi_3 Location: 2 6968-2 742 4 bp Feature: gene Location: 27452-28372 bp Ori: KSX67898.1 Feature: domain Description: AbiEii Location: 27494-28235 bp Feature: domain Description: AbiEii Location: 2 7494-2 82 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)