myRT

myRT report for GCA_001462975.1_ASM146297v1

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Seq: LNHR01000163.1 Escherichia coli strain 50640492 contig72, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2180 bp Ori: KSX88137.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LNHR01000050.1 Escherichia coli strain 50640492 contig143, whole genome shotgun sequence (53822 bp)
Overview 1 RT 1: 23723-30180 bp Neighborhood of RT #1 [23723, 30206] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 23723-24778 bp Ori: KSX99389.1 Feature: domain Description: YesN Location: 23726-24125 bp Feature: domain Description: YesN Location: 2 372 6-2 412 5 bp Feature: domain Description: YesN Location: 24458-24755 bp Feature: domain Description: YesN Location: 2 4458-2 4755 bp Feature: gene Location: 24795-26024 bp Ori: KSX99390.1 Feature: domain Description: YesM Location: 25275-26016 bp Feature: domain Description: YesM Location: 2 52 75-2 6016 bp Feature: gene Location: 26673-27194 bp Ori: KSX99391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26679-26961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6679-2 6961 bp Feature: domain Description: GIIM Note: maturase Location: 27009-27189 bp Feature: domain Description: GIIM Note: maturase Location: 2 7009-2 7189 bp Feature: gene Location: 27222-27761 bp Ori: KSX99392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27552-27630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7552 -2 7630 bp Feature: gene Location: 28247-29152 bp Feature: gene Location: 29289-30206 bp Ori: KSX99394.1 Feature: domain Description: PFLE_PFLC Location: 29325-30180 bp Feature: domain Description: PFLE_PFLC Location: 2 932 5-30180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LNHR01000153.1 Escherichia coli strain 50640492 contig63, whole genome shotgun sequence (89516 bp)
Overview 1 RT 1: 3256-6394 bp Neighborhood of RT #1 [3256, 6396] IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Feature: gene Location: 3256-3915 bp Feature: gene Location: 3932-4687 bp Ori: KSX89032.1 Feature: domain Description: IstB_IS21_ATP Location: 4004-4088 bp Feature: domain Description: IstB_IS21_ATP Location: 4004-4088 bp Feature: domain Description: IstB_IS21 Location: 4097-4622 bp Feature: domain Description: IstB_IS21 Location: 4097-4622 bp Feature: gene Location: 4829-5878 bp Ori: KSX89033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847-5501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4847-5501 bp Feature: domain Description: GIIM Note: maturase Location: 5579-5804 bp Feature: domain Description: GIIM Note: maturase Location: 5579-5804 bp Feature: gene Location: 5949-6140 bp Ori: KSX89034.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 6006-6117 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6006-6117 bp Feature: gene Location: 6184-6396 bp Feature: domain Description: Dps Location: 6202-6394 bp Feature: domain Description: Dps Location: 6202-63 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)

Seq: LNHR01000003.1 Escherichia coli strain 50640492 contig100, whole genome shotgun sequence (146706 bp)
Overview 1 RT 1: 2983-9014 bp Neighborhood of RT #1 [2983, 9151] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2983-3123 bp Ori: KSY02455.1 Feature: domain Description: SfsB Location: 2992-3064 bp Feature: domain Description: SfsB Location: 2992-3064 bp Feature: gene Location: 3120-3590 bp Feature: gene Location: 3937-7146 bp Ori: KSY02457.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4465-4954 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 4 65-4 954 bp Feature: domain Description: nitrilase Location: 6460-7057 bp Feature: domain Description: nitrilase Location: 64 60-7057 bp Feature: gene Location: 7441-8244 bp Ori: KSY02458.1 Feature: domain Description: AbiEi_3_N Location: 7474-7735 bp Feature: domain Description: AbiEi_3_N Location: 74 74 -7735 bp Feature: domain Description: AbiEi_3 Location: 7747-8203 bp Feature: domain Description: AbiEi_3 Location: 774 7-8203 bp Feature: gene Location: 8231-9151 bp Ori: KSY02459.1 Feature: domain Description: AbiEii Location: 8273-9014 bp Feature: domain Description: AbiEii Location: 8273-9014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)