myRT

myRT report for GCA_001463165.1_ASM146316v1

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Seq: CP012043.1 Klebsiella pneumoniae strain U25 genome (5491870 bp)
Overview 1 RT 1: 2350876-2356294 bp 2 RT 2: 3594180-3600640 bp 3 RT 3: 3789195-3795678 bp 4 RT 4: 4097596-4104034 bp 5 RT 5: 4889342-4894808 bp Neighborhood of RT #1 [2350876, 2356296] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [3594180, 3600640] PRK10276 RVT-GII Neighborhood of RT #3 [3789195, 3795680] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #4 [4097596, 4104034] PRK10276 RVT-GII Neighborhood of RT #5 [4889342, 4894825] RVT-UG4 FimD FimC Feature: gene Location: 2350876-2352015 bp Ori: ALP78082.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2351059-2351959 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2351 059-2351 959 bp Feature: gene Location: 2352186-2352428 bp Ori: ALP78083.1 Feature: domain Description: DinI Location: 2352237-2352417 bp Feature: domain Description: DinI Location: 2352237-235241 7 bp Feature: gene Location: 2353046-2354530 bp Ori: ALP78084.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2353448-2354138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2353448-23541 38 bp Feature: gene Location: 2354609-2355028 bp Ori: ALP78085.1 Feature: domain Description: PRK10276 Location: 2354612-2355023 bp Feature: domain Description: PRK1 0276 Location: 235461 2-2355023 bp Feature: gene Location: 2355031-2356296 bp Ori: ALP78086.1 Feature: domain Description: umuC Location: 2355034-2356294 bp Feature: domain Description: umuC Location: 2355034-2356294 bp Feature: gene Location: 3594180-3594497 bp Ori: ALP79240.1 Feature: domain Description: PRK10276 Location: 3594186-3594303 bp Feature: domain Description: PRK1 0276 Location: 35941 86-3594303 bp Feature: gene Location: 3594497-3594736 bp Feature: gene Location: 3594814-3596298 bp Ori: ALP79242.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3595216-3595906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359521 6-3595906 bp Feature: gene Location: 3597710-3598444 bp Feature: gene Location: 3598457-3600640 bp Feature: gene Location: 3789195-3790253 bp Ori: ALP79421.1 Feature: domain Description: YccC Location: 3789201-3790239 bp Feature: domain Description: YccC Location: 3789201 -3790239 bp Feature: gene Location: 3790352-3790825 bp Ori: ALP79422.1 Feature: domain Description: PRK10016 Location: 3790355-3790814 bp Feature: domain Description: PRK1 001 6 Location: 3790355-379081 4 bp Feature: gene Location: 3790907-3792391 bp Ori: ALP79423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3791309-3791999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3791 309-3791 999 bp Feature: gene Location: 3792912-3794075 bp Ori: ALP81161.1 Feature: domain Description: dacD Location: 3792915-3794070 bp Feature: domain Description: dacD Location: 379291 5-3794070 bp Feature: gene Location: 3794256-3795680 bp Ori: ALP79424.1 Gene: sbcB Feature: domain Description: SbcB Location: 3794262-3795678 bp Feature: domain Description: SbcB Location: 3794262-3795678 bp Feature: gene Location: 4097596-4097967 bp Ori: ALP79671.1 Feature: domain Description: PRK10276 Location: 4097641-4097764 bp Feature: domain Description: PRK1 0276 Location: 4097641 -4097764 bp Feature: gene Location: 4097924-4098163 bp Feature: gene Location: 4098238-4099722 bp Ori: ALP79673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4098640-4099330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4098640-4099330 bp Feature: gene Location: 4101134-4101868 bp Feature: gene Location: 4101881-4104034 bp Feature: gene Location: 4889342-4891423 bp Ori: ALP80432.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4889753-4890197 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4889753-48901 97 bp Feature: gene Location: 4891420-4894014 bp Ori: ALP80433.1 Feature: domain Description: FimD Location: 4891462-4894003 bp Feature: domain Description: FimD Location: 4891 462-4894003 bp Feature: gene Location: 4894061-4894825 bp Ori: ALP80434.1 Feature: domain Description: FimC Location: 4894106-4894808 bp Feature: domain Description: FimC Location: 48941 06-4894808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), RVT-UG4
FimD (COG3188), FimC (COG3121)