myRT

myRT report for GCA_001463195.1_ASM146319v1

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Seq: LNHY01000130.1 Escherichia coli strain 50676002 contig44, whole genome shotgun sequence (124760 bp)
Overview 1 RT 1: 53285-62026 bp Neighborhood of RT #1 [53285, 62026] PRK11388 RVT-Retrons Feature: gene Location: 53285-55204 bp Ori: KSY30250.1 Feature: domain Description: PRK11388 Location: 53288-55196 bp Feature: domain Description: PRK1 1 388 Location: 53288-551 96 bp Feature: gene Location: 55241-55471 bp Feature: gene Location: 56496-58253 bp Ori: KSY30252.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56640-57258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56640-57258 bp Feature: gene Location: 59623-60138 bp Feature: gene Location: 60140-62026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons

Seq: LNHY01000158.1 Escherichia coli strain 50676002 contig7, whole genome shotgun sequence (12113 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7310 bp Feature: gene Location: 7931-8482 bp Ori: KSY25548.1 Feature: domain Description: SLATT_5 Location: 7940-8453 bp Feature: domain Description: SLATT_5 Location: 7940-8453 bp Feature: gene Location: 8460-9830 bp Ori: KSY25549.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-92 94 bp Feature: gene Location: 9943-10527 bp Ori: KSY25550.1 Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Ori: KSY25551.1 Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: LNHY01000042.1 Escherichia coli strain 50676002 contig136, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 1767-5500 bp Neighborhood of RT #1 [1767, 5500] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1767-2000 bp Ori: KSY38340.1 Feature: domain Description: DUF905 Location: 1797-1995 bp Feature: domain Description: DUF905 Location: 1797-1995 bp Feature: gene Location: 2068-2565 bp Ori: KSY38341.1 Feature: domain Description: PRK13732 Location: 2071-2563 bp Feature: domain Description: PRK13 73 2 Location: 2071-2563 bp Feature: gene Location: 2715-4616 bp Ori: KSY38342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982-3 813 bp Feature: domain Description: Intron_maturas2 Location: 3927-4185 bp Feature: domain Description: Intron_maturas2 Location: 3 927-4185 bp Feature: domain Description: HNHc Note: nucleases Location: 4359-4521 bp Feature: domain Description: HNHc Note: nucleases Location: 43 59-4521 bp Feature: gene Location: 5294-5500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)