myRT

myRT report for GCA_001463345.1_ASM146334v1

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Seq: LNIH01000191.1 Escherichia coli strain 50760471 contig270, whole genome shotgun sequence (140293 bp)
Overview 1 RT 1: 25515-31546 bp Neighborhood of RT #1 [25515, 31683] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 25515-25655 bp Ori: KSY72160.1 Feature: domain Description: SfsB Location: 25524-25596 bp Feature: domain Description: SfsB Location: 25524-25596 bp Feature: gene Location: 25652-26122 bp Feature: gene Location: 26469-29678 bp Ori: KSY72162.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 26997-27486 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 26997-27486 bp Feature: domain Description: nitrilase Location: 28992-29589 bp Feature: domain Description: nitrilase Location: 28992-29589 bp Feature: gene Location: 29973-30776 bp Ori: KSY72163.1 Feature: domain Description: AbiEi_3_N Location: 30006-30267 bp Feature: domain Description: AbiEi_3_N Location: 30006-30267 bp Feature: domain Description: AbiEi_3 Location: 30279-30735 bp Feature: domain Description: AbiEi_3 Location: 30279-30735 bp Feature: gene Location: 30763-31683 bp Ori: KSY72164.1 Feature: domain Description: AbiEii Location: 30805-31546 bp Feature: domain Description: AbiEii Location: 30805-31 546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LNIH01000014.1 Escherichia coli strain 50760471 contig110, whole genome shotgun sequence (60606 bp)
Overview 1 RT 1: 10871-14009 bp Neighborhood of RT #1 [10871, 14011] IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Feature: gene Location: 10871-11530 bp Feature: gene Location: 11547-12302 bp Ori: KSY82773.1 Feature: domain Description: IstB_IS21_ATP Location: 11619-11703 bp Feature: domain Description: IstB_IS2 1_ATP Location: 11619-11703 bp Feature: domain Description: IstB_IS21 Location: 11712-12237 bp Feature: domain Description: IstB_IS2 1 Location: 11712 -12 2 37 bp Feature: gene Location: 12444-13493 bp Ori: KSY82774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12462-13116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 462 -13116 bp Feature: domain Description: GIIM Note: maturase Location: 13194-13419 bp Feature: domain Description: GIIM Note: maturase Location: 13194-13419 bp Feature: gene Location: 13564-13755 bp Ori: KSY82775.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 13621-13732 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1362 1-13732 bp Feature: gene Location: 13799-14011 bp Feature: domain Description: Dps Location: 13817-14009 bp Feature: domain Description: Dps Location: 13817-14009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)

Seq: LNIH01000194.1 Escherichia coli strain 50760471 contig273, whole genome shotgun sequence (43382 bp)
Overview 1 RT 1: 3116-9507 bp Neighborhood of RT #1 [3116, 9533] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 3116-4171 bp Ori: KSY71826.1 Feature: domain Description: YesN Location: 3119-3509 bp Feature: domain Description: YesN Location: 3 119-3 509 bp Feature: domain Description: YesN Location: 3851-4148 bp Feature: domain Description: YesN Location: 3 851-4148 bp Feature: gene Location: 4188-5417 bp Ori: KSY71827.1 Feature: domain Description: YesM Location: 4668-5409 bp Feature: domain Description: YesM Location: 4668-5409 bp Feature: gene Location: 6000-6521 bp Ori: KSY71828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6006-6288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6006-6288 bp Feature: domain Description: GIIM Note: maturase Location: 6336-6516 bp Feature: domain Description: GIIM Note: maturase Location: 63 3 6-6516 bp Feature: gene Location: 6549-7088 bp Ori: KSY71829.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6879-6957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6879-6957 bp Feature: gene Location: 7574-8479 bp Feature: gene Location: 8616-9533 bp Ori: KSY71831.1 Feature: domain Description: PFLE_PFLC Location: 8652-9507 bp Feature: domain Description: PFLE_PFLC Location: 8652-9507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LNIH01000070.1 Escherichia coli strain 50760471 contig161, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: KSY79000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)