myRT

myRT report for GCA_001463585.1_ASM146358v1

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Seq: LNID01000154.1 Escherichia coli strain 50739467 contig60, whole genome shotgun sequence (166176 bp)
Overview 1 RT 1: 137555-143664 bp Neighborhood of RT #1 [137555, 143723] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 137555-138475 bp Ori: KSY48428.1 Feature: domain Description: AbiEii Location: 137597-138338 bp Feature: domain Description: AbiEii Location: 1 37597-1 38338 bp Feature: gene Location: 138462-139265 bp Ori: KSY48429.1 Feature: domain Description: AbiEi_3_N Location: 138495-138756 bp Feature: domain Description: AbiEi_3_N Location: 1 38495-1 38756 bp Feature: domain Description: AbiEi_3 Location: 138768-139224 bp Feature: domain Description: AbiEi_3 Location: 1 38768-1 39224 bp Feature: gene Location: 139560-142769 bp Ori: KSY48430.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140088-140577 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 40088-1 40577 bp Feature: domain Description: nitrilase Location: 142083-142680 bp Feature: domain Description: nitrilase Location: 1 42083-1 42680 bp Feature: gene Location: 143116-143586 bp Feature: gene Location: 143583-143723 bp Ori: KSY48432.1 Feature: domain Description: SfsB Location: 143592-143664 bp Feature: domain Description: SfsB Location: 1 43592-1 43664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)

Seq: LNID01000012.1 Escherichia coli strain 50739467 contig109, whole genome shotgun sequence (16991 bp)
Overview 1 RT 1: 7123-11541 bp Neighborhood of RT #1 [7123, 11541] fecE RVT-GII GIIM Feature: gene Location: 7123-7890 bp Ori: KSY60103.1 Feature: domain Description: fecE Location: 7126-7888 bp Feature: domain Description: fecE Location: 712 6-7888 bp Feature: gene Location: 8448-8705 bp Feature: gene Location: 9356-10864 bp Ori: KSY60105.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9614-10346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9614-10346 bp Feature: domain Description: GIIM Note: maturase Location: 10421-10619 bp Feature: domain Description: GIIM Note: maturase Location: 1042 1-10619 bp Feature: gene Location: 10833-11258 bp Feature: gene Location: 11173-11541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fecE (PRK11231), RVT-GII, GIIM (pfam08388)

Seq: LNID01000085.1 Escherichia coli strain 50739467 contig175, whole genome shotgun sequence (57749 bp)
Overview 1 RT 1: 20464-26855 bp Neighborhood of RT #1 [20464, 26881] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 20464-21519 bp Ori: KSY54704.1 Feature: domain Description: YesN Location: 20467-20857 bp Feature: domain Description: YesN Location: 20467-20857 bp Feature: domain Description: YesN Location: 21199-21496 bp Feature: domain Description: YesN Location: 21199-21496 bp Feature: gene Location: 21536-22765 bp Ori: KSY54705.1 Feature: domain Description: YesM Location: 22016-22757 bp Feature: domain Description: YesM Location: 22016-22757 bp Feature: gene Location: 23348-23869 bp Ori: KSY54706.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23354-23636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 54-23 63 6 bp Feature: domain Description: GIIM Note: maturase Location: 23684-23864 bp Feature: domain Description: GIIM Note: maturase Location: 23 684-23 864 bp Feature: gene Location: 23897-24436 bp Ori: KSY54707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24227-24305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24227-243 05 bp Feature: gene Location: 24922-25827 bp Feature: gene Location: 25964-26881 bp Ori: KSY54709.1 Feature: domain Description: PFLE_PFLC Location: 26000-26855 bp Feature: domain Description: PFLE_PFLC Location: 26000-26855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)