myRT

myRT report for GCA_001463645.1_ASM146364v1

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Seq: LNIK01000050.1 Escherichia coli strain 50822286 contig17, whole genome shotgun sequence (49947 bp)
Overview 1 RT 1: 5734-11660 bp Neighborhood of RT #1 [5734, 11660] HD_2 RVT-GII GIIM PRK06850 Feature: gene Location: 5734-6339 bp Feature: domain Description: HD_2 Location: 5758-6265 bp Feature: domain Description: HD_2 Location: 5758-6265 bp Feature: gene Location: 6411-6614 bp Feature: gene Location: 6860-8248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7190-7808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 90-7808 bp Feature: domain Description: GIIM Note: maturase Location: 7862-8075 bp Feature: domain Description: GIIM Note: maturase Location: 7862-8075 bp Feature: gene Location: 8733-11186 bp Feature: domain Description: PRK06850 Location: 8922-10092 bp Feature: domain Description: PRK06850 Location: 8922-1 0092 bp Feature: gene Location: 11274-11660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HD_2 (pfam12917), RVT-GII, GIIM (pfam08388), PRK06850 (hypothetical protein; Provisional)

Seq: LNIK01000021.1 Escherichia coli strain 50822286 contig117, whole genome shotgun sequence (184115 bp)
Overview 1 RT 1: 49321-53204 bp Neighborhood of RT #1 [49321, 53209] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49321-49779 bp Feature: domain Description: dut Location: 49327-49774 bp Feature: domain Description: dut Location: 4932 7-49774 bp Feature: gene Location: 49886-50482 bp Feature: domain Description: slmA Location: 49892-50468 bp Feature: domain Description: slmA Location: 49892 -50468 bp Feature: gene Location: 50528-51487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50663-51212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50663-512 12 bp Feature: gene Location: 51785-52426 bp Feature: domain Description: pyrE Location: 51788-52421 bp Feature: domain Description: pyrE Location: 51788-52 42 1 bp Feature: gene Location: 52493-53209 bp Feature: domain Description: rph Location: 52496-53204 bp Feature: domain Description: rph Location: 52 496-532 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LNIK01000019.1 Escherichia coli strain 50822286 contig115, whole genome shotgun sequence (299926 bp)
Overview 1 RT 1: 218055-223926 bp Neighborhood of RT #1 [218055, 223926] P Q RVT-Retrons Feature: gene Location: 218055-219821 bp Feature: domain Description: P Location: 218082-219816 bp Feature: domain Description: P Location: 218082-219816 bp Feature: gene Location: 219821-220846 bp Feature: domain Description: Q Location: 219824-220838 bp Feature: domain Description: Q Location: 219824-22083 8 bp Feature: gene Location: 220882-221811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 220981-221566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 220981-221566 bp Feature: gene Location: 221813-222583 bp Feature: gene Location: 223084-223926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons