myRT

myRT report for GCA_001464385.1_Deltaproteobacteria_bacterium_Ga0077550

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Seq: LNFB01000340.1 Deltaproteobacteria bacterium Ga0077550 Ga0077550_1243.2, whole genome shotgun sequence (158247 bp)
Overview 1 RT 1: 106053-113605 bp Neighborhood of RT #1 [106053, 113754] Cu-binding_MopE Cu-binding_MopE Cu-binding_MopE RluA RVT-GII GIIM TsaA PqqL PqqL PqqL Feature: gene Location: 106053-107249 bp Feature: domain Description: Cu-binding_MopE Location: 106500-106545 bp Feature: domain Description: Cu-binding_MopE Location: 1 06500-1 06545 bp Feature: domain Description: Cu-binding_MopE Location: 106647-106692 bp Feature: domain Description: Cu-binding_MopE Location: 1 06647-1 06692 bp Feature: domain Description: Cu-binding_MopE Location: 106782-106839 bp Feature: domain Description: Cu-binding_MopE Location: 1 06782-1 06839 bp Feature: gene Location: 107066-108031 bp Feature: domain Description: RluA Location: 107114-107942 bp Feature: domain Description: RluA Location: 1 071 1 4-1 07942 bp Feature: gene Location: 108041-109645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108512-109145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0851 2-1 091 45 bp Feature: domain Description: GIIM Note: maturase Location: 109238-109451 bp Feature: domain Description: GIIM Note: maturase Location: 1 09238-1 09451 bp Feature: gene Location: 110149-110688 bp Feature: domain Description: TsaA Location: 110209-110659 bp Feature: domain Description: TsaA Location: 1 1 0209-1 1 0659 bp Feature: gene Location: 110692-113754 bp Feature: domain Description: PqqL Location: 110875-112267 bp Feature: domain Description: PqqL Location: 1 1 0875-1 1 2267 bp Feature: domain Description: PqqL Location: 112588-112825 bp Feature: domain Description: PqqL Location: 1 1 2588-1 1 2825 bp Feature: domain Description: PqqL Location: 113107-113605 bp Feature: domain Description: PqqL Location: 1 1 31 07-1 1 3605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cu-binding_MopE (pfam11617), RluA (COG0564), RVT-GII, GIIM (pfam08388), TsaA (COG1720), PqqL (COG0612)

Seq: LNFB01000389.1 Deltaproteobacteria bacterium Ga0077550 Ga0077550_1282.1, whole genome shotgun sequence (60560 bp)
Overview 1 RT 1: 55618-60108 bp Neighborhood of RT #1 [55618, 60341] STKc_PknB_like TPR_12 TPR_12 TPR_12 RVT-Retrons Feature: gene Location: 55618-56349 bp Feature: gene Location: 56449-59238 bp Feature: domain Description: STKc_PknB_like Location: 56575-57400 bp Feature: domain Description: STKc_PknB_like Location: 56575-57400 bp Feature: domain Description: TPR_12 Location: 58303-58522 bp Feature: domain Description: TPR_12 Location: 58303-5852 2 bp Feature: domain Description: TPR_12 Location: 58552-58768 bp Feature: domain Description: TPR_12 Location: 58552 -58768 bp Feature: domain Description: TPR_12 Location: 58804-59020 bp Feature: domain Description: TPR_12 Location: 58804-5902 0 bp Feature: gene Location: 59283-60341 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59457-60108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59457-60108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), TPR_12 (pfam13424), RVT-Retrons

Seq: LNFB01000391.1 Deltaproteobacteria bacterium Ga0077550 Ga0077550_1283.2, whole genome shotgun sequence (21885 bp)
Overview 1 RT 1: 17137-21343 bp Neighborhood of RT #1 [17137, 21699] COG2192 Sod_Cu RVT-GII Feature: gene Location: 17137-19110 bp Feature: domain Description: COG2192 Location: 17281-19048 bp Feature: domain Description: COG2192 Location: 17281-19048 bp Feature: gene Location: 19159-19725 bp Feature: domain Description: Sod_Cu Location: 19318-19708 bp Feature: domain Description: Sod_Cu Location: 193 18-19708 bp Feature: gene Location: 20302-21699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20662-21343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20662-213 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2192 (Predicted carbamoyl transferase, NodU family ), Sod_Cu (pfam00080), RVT-GII