myRT

myRT report for GCA_001466755.1_ASM146675v1

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Seq: ATLY01000017.1 Escherichia coli NCCP 15653 contig17, whole genome shotgun sequence (17258 bp)
Overview 1 RT 1: 198-2727 bp Neighborhood of RT #1 [198, 2792] RVT-GII GIIM PHA02517 Feature: gene Location: 198-1721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 -1 203 bp Feature: domain Description: GIIM Note: maturase Location: 1278-1476 bp Feature: domain Description: GIIM Note: maturase Location: 1 278-1 476 bp Feature: gene Location: 1675-2100 bp Feature: gene Location: 2313-2792 bp Feature: domain Description: PHA02517 Location: 2373-2727 bp Feature: domain Description: PHA0251 7 Location: 2373-2727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: ATLY01000020.1 Escherichia coli NCCP 15653 contig20, whole genome shotgun sequence (27272 bp)
Overview 1 RT 1: 20430-24236 bp Neighborhood of RT #1 [20430, 24236] InsE Tra5 RVT-GII GIIM Feature: gene Location: 20430-20729 bp Feature: domain Description: InsE Location: 20457-20724 bp Feature: domain Description: InsE Location: 2 0457-2 072 4 bp Feature: gene Location: 20726-21373 bp Feature: domain Description: Tra5 Location: 20837-21347 bp Feature: domain Description: Tra5 Location: 2 0837-2 1347 bp Feature: gene Location: 21693-23216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21966-22698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1966-2 2 698 bp Feature: domain Description: GIIM Note: maturase Location: 22773-22971 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 773-2 2 971 bp Feature: gene Location: 23510-23881 bp Feature: gene Location: 23952-24236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: ATLY01000024.1 Escherichia coli NCCP 15653 contig24, whole genome shotgun sequence (17418 bp)
Overview 1 RT 1: 14467-17142 bp Neighborhood of RT #1 [14467, 17387] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 14467-14793 bp Feature: domain Description: InsE Location: 14470-14791 bp Feature: domain Description: InsE Location: 14470-14791 bp Feature: gene Location: 14793-15272 bp Feature: domain Description: PHA02517 Location: 14853-15207 bp Feature: domain Description: PHA02517 Location: 14853 -15207 bp Feature: gene Location: 15864-17387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16137-16869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613 7-16869 bp Feature: domain Description: GIIM Note: maturase Location: 16944-17142 bp Feature: domain Description: GIIM Note: maturase Location: 16944-17142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: ATLY01000003.1 Escherichia coli NCCP 15653 contig3, whole genome shotgun sequence (115727 bp)
Overview 1 RT 1: 25836-32079 bp Neighborhood of RT #1 [25836, 32216] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 25836-26102 bp Feature: domain Description: Phage_integrase Location: 25902-25998 bp Feature: domain Description: Phage_integrase Location: 25902-25998 bp Feature: gene Location: 26185-26655 bp Feature: gene Location: 27002-30211 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 27530-28019 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 27530-28019 bp Feature: domain Description: nitrilase Location: 29525-30122 bp Feature: domain Description: nitrilase Location: 29525-30122 bp Feature: gene Location: 30506-31309 bp Feature: domain Description: AbiEi_3_N Location: 30539-30800 bp Feature: domain Description: AbiEi_3_N Location: 30539-30800 bp Feature: domain Description: AbiEi_3 Location: 30812-31268 bp Feature: domain Description: AbiEi_3 Location: 30812-31268 bp Feature: gene Location: 31296-32216 bp Feature: domain Description: AbiEii Location: 31338-32079 bp Feature: domain Description: AbiEii Location: 31338-32079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: ATLY01000031.1 Escherichia coli NCCP 15653 contig31, whole genome shotgun sequence (108006 bp)
Overview 1 RT 1: 7951-12258 bp 2 RT 2: 35625-39887 bp 3 RT 3: 49088-53070 bp Neighborhood of RT #1 [7951, 12258] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [35625, 39904] PHA02517 RVT-GII GIIM PHA02517 FadR Neighborhood of RT #3 [49088, 53096] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 7951-9213 bp Feature: domain Description: YesM Location: 8464-9205 bp Feature: domain Description: YesM Location: 8464-9205 bp Feature: gene Location: 9243-9413 bp Feature: gene Location: 9779-10300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785-10067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785 -10067 bp Feature: domain Description: GIIM Note: maturase Location: 10115-10295 bp Feature: domain Description: GIIM Note: maturase Location: 10115 -10295 bp Feature: gene Location: 10328-10867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10658-10736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065 8-10736 bp Feature: gene Location: 10898-11095 bp Feature: gene Location: 11353-12258 bp Feature: gene Location: 35625-36449 bp Feature: gene Location: 36576-36866 bp Feature: domain Description: PHA02517 Location: 36582-36801 bp Feature: domain Description: PHA025 17 Location: 365 82-36801 bp Feature: gene Location: 37458-38981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37731-38463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37731-38463 bp Feature: domain Description: GIIM Note: maturase Location: 38538-38736 bp Feature: domain Description: GIIM Note: maturase Location: 385 38-38736 bp Feature: gene Location: 39110-39550 bp Feature: domain Description: PHA02517 Location: 39113-39521 bp Feature: domain Description: PHA025 17 Location: 39113-395 21 bp Feature: gene Location: 39770-39904 bp Feature: domain Description: FadR Location: 39785-39887 bp Feature: domain Description: FadR Location: 39785 -39887 bp Feature: gene Location: 49088-50119 bp Feature: domain Description: Asparaginase_2 Location: 49178-50111 bp Feature: domain Description: Asparaginase_2 Location: 49178-5 0111 bp Feature: gene Location: 50446-50595 bp Feature: gene Location: 50643-51089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50949-51051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0949-5 105 1 bp Feature: gene Location: 51311-51682 bp Feature: gene Location: 51735-53096 bp Feature: domain Description: DcuC Location: 51738-53070 bp Feature: domain Description: DcuC Location: 5 1738-5 3070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112), DcuC (TIGR00771)