myRT

myRT report for GCA_001467145.1_ASM146714v1

Download annotations/find similar RTs

Seq: LKBK01000136.1 Pseudomonas sp. ICMP 19500 scaffold91, whole genome shotgun sequence (7983 bp)
Overview 1 RT 1: 3689-7908 bp Neighborhood of RT #1 [3689, 7934] ABC_phnC IS5 RVT-GII GIIM IS5 Feature: gene Location: 3689-4516 bp Feature: domain Description: ABC_phnC Location: 3719-4433 bp Feature: domain Description: ABC_phnC Location: 371 9-4433 bp Feature: gene Location: 5103-5555 bp Feature: domain Description: IS5 Location: 5229-5553 bp Feature: domain Description: IS5 Location: 5229-5553 bp Feature: gene Location: 6136-7404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6349-7006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6349-7006 bp Feature: domain Description: GIIM Note: maturase Location: 7084-7306 bp Feature: domain Description: GIIM Note: maturase Location: 7084-7306 bp Feature: gene Location: 7464-7934 bp Feature: domain Description: IS5 Location: 7470-7908 bp Feature: domain Description: IS5 Location: 7470-7908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: LKBK01000082.1 Pseudomonas sp. ICMP 19500 scaffold42, whole genome shotgun sequence (50289 bp)
Overview 1 RT 1: 1-4901 bp Neighborhood of RT #1 [1, 4930] ACR3 RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 1-621 bp Feature: domain Description: ACR3 Location: 4-601 bp Feature: domain Description: ACR3 Location: 4-601 bp Feature: gene Location: 986-2647 bp Feature: RT Description: RVT_N Location: 1031-1274 bp Feature: RT Description: RVT_N Location: 1031-12 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319-1955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319-1955 bp Feature: domain Description: GIIM Note: maturase Location: 2012-2240 bp Feature: domain Description: GIIM Note: maturase Location: 2 012 -2 2 40 bp Feature: gene Location: 3220-4533 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3352-3559 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3352 -3559 bp Feature: domain Description: zf-IS66 Location: 3598-3712 bp Feature: domain Description: zf-IS66 Location: 3598-3712 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3754-4528 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3754-452 8 bp Feature: gene Location: 4595-4930 bp Feature: domain Description: TnpB_IS66 Location: 4613-4901 bp Feature: domain Description: TnpB_IS66 Location: 4613-4901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LKBK01000076.1 Pseudomonas sp. ICMP 19500 scaffold37, whole genome shotgun sequence (58759 bp)
Overview 1 RT 1: 25383-29003 bp Neighborhood of RT #1 [25383, 29003] RVT-DGRs Avd_like Feature: gene Location: 25383-25610 bp Feature: gene Location: 26061-26582 bp Feature: gene Location: 26628-27623 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26715-27399 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26715-273 99 bp Feature: gene Location: 27998-28351 bp Feature: domain Description: Avd_like Location: 28025-28331 bp Feature: domain Description: Avd_like Location: 28025-283 3 1 bp Feature: gene Location: 28410-29003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: LKBK01000055.1 Pseudomonas sp. ICMP 19500 scaffold18, whole genome shotgun sequence (118097 bp)
Overview 1 RT 1: 23610-32567 bp Neighborhood of RT #1 [23610, 32617] NTP_transferase_like_1 COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 23610-24284 bp Feature: domain Description: NTP_transferase_like_1 Location: 23616-24255 bp Feature: domain Description: NTP_transferase_like_1 Location: 23616-24 255 bp Feature: gene Location: 24281-25306 bp Feature: domain Description: COG3178 Location: 24302-25298 bp Feature: domain Description: COG3178 Location: 24 302-25298 bp Feature: gene Location: 26610-28310 bp Feature: RT Description: RVT_N Location: 26667-26910 bp Feature: RT Description: RVT_N Location: 26667-26910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26955-27591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26955-27591 bp Feature: domain Description: GIIM Note: maturase Location: 27642-27876 bp Feature: domain Description: GIIM Note: maturase Location: 2764 2-27876 bp Feature: domain Description: HNH Note: nucleases Location: 28128-28266 bp Feature: domain Description: HNH Note: nucleases Location: 28128-28266 bp Feature: gene Location: 28462-31302 bp Feature: domain Description: LptD Location: 28801-31285 bp Feature: domain Description: LptD Location: 28801-31285 bp Feature: gene Location: 31319-32617 bp Feature: domain Description: PRK10770 Location: 31361-32567 bp Feature: domain Description: PRK10770 Location: 31361-32567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: LKBK01000002.1 Pseudomonas sp. ICMP 19500 scaffold10, whole genome shotgun sequence (157702 bp)
Overview 1 RT 1: 114006-122694 bp Neighborhood of RT #1 [114006, 122738] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P SLC-NCS1sbd_CobB-like Feature: gene Location: 114006-116096 bp Feature: domain Description: HyuA Location: 114021-116076 bp Feature: domain Description: HyuA Location: 114021-116076 bp Feature: gene Location: 116132-117877 bp Feature: domain Description: Hydantoinase_B Location: 116147-117731 bp Feature: domain Description: Hydantoinase_B Location: 116147-117731 bp Feature: gene Location: 118178-119551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118535-119150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185 35 -11915 0 bp Feature: domain Description: GIIM Note: maturase Location: 119204-119432 bp Feature: domain Description: GIIM Note: maturase Location: 119204-119432 bp Feature: gene Location: 120051-121229 bp Feature: domain Description: Porin_O_P Location: 120276-121113 bp Feature: domain Description: Porin_O_P Location: 120276-121113 bp Feature: gene Location: 121377-122738 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 121434-122694 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 121434-122694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388), Porin_O_P (pfam07396), SLC-NCS1sbd_CobB-like (cd11484)