myRT

myRT report for GCA_001467225.1_ASM146722v1

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Seq: LKBQ01000047.1 Pseudomonas syringae pv. actinidiae ICMP 19497 scaffold140, whole genome shotgun sequence (5518 bp)
Overview 1 RT 1: 1205-2886 bp Neighborhood of RT #1 [1205, 3674] RVT-UG15 Feature: gene Location: 1205-1462 bp Feature: gene Location: 1715-1963 bp Feature: gene Location: 2370-3674 bp Ori: KTC49630.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2475-2886 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 2475-2886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15

Seq: LKBQ01000102.1 Pseudomonas syringae pv. actinidiae ICMP 19497 scaffold190, whole genome shotgun sequence (482 bp)
Overview 1 RT 1: 82-481 bp Neighborhood of RT #1 [82, 482] RVT-GII Feature: gene Location: 82-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LKBQ01000086.1 Pseudomonas syringae pv. actinidiae ICMP 19497 scaffold176, whole genome shotgun sequence (626 bp)
Overview 1 RT 1: 1-436 bp Neighborhood of RT #1 [1, 570] RVT-GII GIIM Feature: gene Location: 1-570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-151 bp Feature: domain Description: GIIM Note: maturase Location: 208-436 bp Feature: domain Description: GIIM Note: maturase Location: 208-43 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LKBQ01000198.1 Pseudomonas syringae pv. actinidiae ICMP 19497 scaffold67, whole genome shotgun sequence (32571 bp)
Overview 1 RT 1: 19820-26009 bp Neighborhood of RT #1 [19820, 26089] MscS RVT-Retrons DUF4427 Pentapeptide Pentapeptide Pentapeptide Feature: gene Location: 19820-20581 bp Feature: domain Description: MscS Location: 19925-20582 bp Feature: domain Description: MscS Location: 19925-20582 bp Feature: gene Location: 21143-22399 bp Feature: gene Location: 22561-23727 bp Ori: KTC45576.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22816-23437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22816-234 37 bp Feature: gene Location: 23931-25154 bp Ori: KTC45577.1 Feature: domain Description: DUF4427 Location: 24849-25134 bp Feature: domain Description: DUF4 4 27 Location: 24 84 9-25134 bp Feature: gene Location: 25559-26089 bp Ori: KTC45578.1 Feature: domain Description: Pentapeptide Location: 25676-25787 bp Feature: domain Description: Pentapeptide Location: 25676-25787 bp Feature: domain Description: Pentapeptide Location: 25793-25898 bp Feature: domain Description: Pentapeptide Location: 25793-25898 bp Feature: domain Description: Pentapeptide Location: 25913-26009 bp Feature: domain Description: Pentapeptide Location: 25913-26009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, DUF4427 (pfam14468), Pentapeptide (pfam00805)