myRT

myRT report for GCA_001468135.1_ASM146813v1

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Seq: LNYU01000023.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg023, whole genome shotgun sequence (25460 bp)
Overview 1 RT 1: 7292-15418 bp Neighborhood of RT #1 [7292, 15438] DUF927 Integrase_1 RVT-Retrons COG3177 Feature: gene Location: 7292-9070 bp Ori: KTD64239.1 Feature: domain Description: DUF927 Location: 7400-8240 bp Feature: domain Description: DUF927 Location: 7400-8240 bp Feature: gene Location: 9171-9980 bp Ori: KTD64240.1 Feature: domain Description: Integrase_1 Location: 9498-9867 bp Feature: domain Description: Integrase_1 Location: 9498-9867 bp Feature: gene Location: 10768-12519 bp Ori: KTD64241.1 Gene: hhoA Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10903-11569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0903-1 1 569 bp Feature: gene Location: 12783-13979 bp Feature: gene Location: 14329-15438 bp Ori: KTD64243.1 Feature: domain Description: COG3177 Location: 14335-15418 bp Feature: domain Description: COG31 77 Location: 1 4335-1 541 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF927 (pfam06048), Integrase_1 (pfam12835), RVT-Retrons, COG3177 (Fic family protein )

Seq: LNYU01000022.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg022, whole genome shotgun sequence (5548 bp)
Overview 1 RT 1: 478-3775 bp Neighborhood of RT #1 [478, 3801] RVT-GII GIIM YbaA PhnB_like Feature: gene Location: 478-762 bp Feature: gene Location: 1208-1852 bp Feature: gene Location: 2244-2834 bp Ori: KTD64589.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2274-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 74-2 445 bp Feature: domain Description: GIIM Note: maturase Location: 2526-2745 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 6-2 745 bp Feature: gene Location: 3008-3361 bp Ori: KTD64590.1 Feature: domain Description: YbaA Location: 3011-3356 bp Feature: domain Description: YbaA Location: 3011-3356 bp Feature: gene Location: 3376-3801 bp Ori: KTD64591.1 Feature: domain Description: PhnB_like Location: 3388-3775 bp Feature: domain Description: PhnB_like Location: 3388-3775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YbaA (COG5507), PhnB_like (cd06588)

Seq: LNYU01000039.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg039, whole genome shotgun sequence (7802 bp)
Overview 1 RT 1: 5062-7045 bp Neighborhood of RT #1 [5062, 7068] RVT-UG18 Feature: gene Location: 5062-5412 bp Feature: gene Location: 5539-6186 bp Feature: gene Location: 6484-7068 bp Ori: KTD61494.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6706-7045 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6706-7045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18

Seq: LNYU01000029.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg029, whole genome shotgun sequence (82289 bp)
Overview 1 RT 1: 12588-18938 bp Neighborhood of RT #1 [12588, 18994] MFS_DtpA_like RVT-UG5 DUF927 Feature: gene Location: 12588-14066 bp Ori: KTD63240.1 Feature: domain Description: MFS_DtpA_like Location: 12615-14010 bp Feature: domain Description: MFS_DtpA_like Location: 12615-14 010 bp Feature: gene Location: 14228-14470 bp Feature: gene Location: 14707-17826 bp Ori: KTD63242.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15223-15733 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 15223-15733 bp Feature: gene Location: 17927-18256 bp Feature: gene Location: 18431-18994 bp Ori: KTD63244.1 Feature: domain Description: DUF927 Location: 18455-18938 bp Feature: domain Description: DUF927 Location: 184 55-18938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_DtpA_like (cd17346), RVT-UG5, DUF927 (pfam06048)

Seq: LNYU01000049.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg049, whole genome shotgun sequence (61056 bp)
Overview 1 RT 1: 54063-60434 bp Neighborhood of RT #1 [54063, 60434] Phage_int_SAM_2 COG3950 COG3950 RVT_N RVT-GII GIIM Feature: gene Location: 54063-54872 bp Ori: KTD60481.1 Feature: domain Description: Phage_int_SAM_2 Location: 54108-54336 bp Feature: domain Description: Phage_int_SAM_2 Location: 5 4108-5 4336 bp Feature: gene Location: 55548-57296 bp Ori: KTD60482.1 Feature: domain Description: COG3950 Location: 55554-55737 bp Feature: domain Description: COG395 0 Location: 5 5 5 5 4-5 5 737 bp Feature: domain Description: COG3950 Location: 56466-56598 bp Feature: domain Description: COG395 0 Location: 5 6466-5 65 98 bp Feature: gene Location: 57459-59000 bp Ori: KTD60483.1 Feature: domain Description: RVT_N Location: 57513-57756 bp Feature: domain Description: RVT_N Location: 5 75 13-5 775 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57801-58440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7801-5 8440 bp Feature: domain Description: GIIM Note: maturase Location: 58500-58728 bp Feature: domain Description: GIIM Note: maturase Location: 5 85 00-5 8728 bp Feature: gene Location: 59787-60434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LNYU01000050.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg050, whole genome shotgun sequence (116365 bp)
Overview 1 RT 1: 66992-72751 bp Neighborhood of RT #1 [66992, 72978] SidC_N RVT-UG18 DDE_Tnp_1_3 YbjQ_1 YbjQ_1 YbjQ_1 Feature: gene Location: 66992-67699 bp Ori: KTD60313.1 Feature: domain Description: SidC_N Location: 66995-67688 bp Feature: domain Description: SidC_N Location: 6 6 995-6 76 88 bp Feature: gene Location: 69334-69720 bp Feature: gene Location: 69668-70564 bp Ori: KTD60315.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 69866-70448 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 6 986 6 -70448 bp Feature: gene Location: 70748-71641 bp Ori: KTD60316.1 Feature: domain Description: DDE_Tnp_1_3 Location: 71075-71516 bp Feature: domain Description: DDE_Tnp_1_3 Location: 71075-71516 bp Feature: gene Location: 71743-72978 bp Ori: KTD60317.1 Feature: domain Description: YbjQ_1 Location: 71818-72001 bp Feature: domain Description: YbjQ_1 Location: 71818-72001 bp Feature: domain Description: YbjQ_1 Location: 72163-72394 bp Feature: domain Description: YbjQ_1 Location: 7216 3-72394 bp Feature: domain Description: YbjQ_1 Location: 72505-72751 bp Feature: domain Description: YbjQ_1 Location: 72505-72751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SidC_N (pfam18219), RVT-UG18, DDE_Tnp_1_3 (pfam13612), YbjQ_1 (pfam01906)

Seq: LNYU01000063.1 Legionella santicrucis strain SC-63-C7 Lsan_ctg063, whole genome shotgun sequence (4092 bp)
Overview 1 RT 1: 173-2619 bp Neighborhood of RT #1 [173, 2619] RVT-UG18 Feature: gene Location: 173-1105 bp Ori: KTD58137.1 Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 395-977 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 395-97 7 bp Feature: gene Location: 1247-2257 bp Feature: gene Location: 2386-2619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18