myRT

myRT report for GCA_001469115.1_ASM146911v1

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Seq: LNQD01000036.1 Lactobacillus paracasei strain DPC6800 DPC6800_Contig0036, whole genome shotgun sequence (4270 bp)
Overview 1 RT 1: 113-4237 bp Neighborhood of RT #1 [113, 4248] InsE RVT-Retrons Trypsin COG3464 RmlD_sub_bind Feature: gene Location: 113-448 bp Ori: KTE98231.1 Feature: domain Description: InsE Location: 155-410 bp Feature: domain Description: InsE Location: 1 55-41 0 bp Feature: gene Location: 554-1774 bp Ori: KTE98232.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 557-779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 557-779 bp Feature: domain Description: Trypsin Location: 1283-1730 bp Feature: domain Description: Trypsin Location: 1 283-1 730 bp Feature: gene Location: 1901-3145 bp Ori: KTE98233.1 Feature: domain Description: COG3464 Location: 2036-3131 bp Feature: domain Description: COG3464 Location: 2036-31 31 bp Feature: gene Location: 3406-4248 bp Ori: KTE98234.1 Feature: domain Description: RmlD_sub_bind Location: 3409-4237 bp Feature: domain Description: RmlD_sub_bind Location: 3409-4237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-Retrons, Trypsin (pfam00089), COG3464 (Transposase ), RmlD_sub_bind (pfam04321)

Seq: LNQD01000035.1 Lactobacillus paracasei strain DPC6800 DPC6800_Contig0035, whole genome shotgun sequence (44326 bp)
Overview 1 RT 1: 348-3930 bp Neighborhood of RT #1 [348, 3938] PHA02517 PHA02517 RVT-Retrons YwqE PRK09379 Feature: gene Location: 348-860 bp Ori: KTE98236.1 Feature: domain Description: PHA02517 Location: 405-849 bp Feature: domain Description: PHA02 517 Location: 405-849 bp Feature: gene Location: 953-1177 bp Ori: KTE98237.1 Feature: domain Description: PHA02517 Location: 959-1151 bp Feature: domain Description: PHA02 517 Location: 959-1151 bp Feature: gene Location: 1297-1809 bp Ori: KTE98238.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1462-1747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1462 -1747 bp Feature: gene Location: 2100-2864 bp Ori: KTE98239.1 Feature: domain Description: YwqE Location: 2103-2847 bp Feature: domain Description: YwqE Location: 2 103-2 847 bp Feature: gene Location: 3273-3938 bp Ori: KTE98240.1 Feature: domain Description: PRK09379 Location: 3276-3930 bp Feature: domain Description: PRK09379 Location: 32 76-3930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, YwqE (COG4464), PRK09379 (LytR family transcriptional regulator)