myRT

myRT report for GCA_001469435.3_ASM146943v3

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Seq: LNIV02000026.1 Pseudomonas aeruginosa strain Hex1T contig_26, whole genome shotgun sequence (301903 bp)
Overview 1 RT 1: 206251-217166 bp 2 RT 2: 233425-242262 bp Neighborhood of RT #1 [206251, 217168] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [233425, 242291] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 206251-206469 bp Feature: gene Location: 207330-208402 bp Feature: domain Description: INT_Rci_Hp1_C Location: 207840-208101 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 207840-2081 01 bp Feature: gene Location: 208705-210390 bp Feature: RT Description: RVT_N Location: 208762-209002 bp Feature: RT Description: RVT_N Location: 208762-209002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209050-209686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209050-209686 bp Feature: domain Description: GIIM Note: maturase Location: 209740-209971 bp Feature: domain Description: GIIM Note: maturase Location: 209740-209971 bp Feature: domain Description: HNH Note: nucleases Location: 210223-210361 bp Feature: domain Description: HNH Note: nucleases Location: 21 0223-21 0361 bp Feature: gene Location: 211471-215208 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 211579-212236 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 21 1 579-21 2236 bp Feature: domain Description: PRK09776 Location: 212449-212920 bp Feature: domain Description: PRK09776 Location: 21 2449-21 2920 bp Feature: domain Description: PAS Location: 212965-213502 bp Feature: domain Description: PAS Location: 21 2965-21 3502 bp Feature: domain Description: PRK10060 Location: 213511-215158 bp Feature: domain Description: PRK1 0060 Location: 21 351 1 -21 51 58 bp Feature: gene Location: 215315-217168 bp Feature: domain Description: PRK05658 Location: 215327-217166 bp Feature: domain Description: PRK05658 Location: 21 5327-21 71 66 bp Feature: gene Location: 233425-234717 bp Feature: domain Description: PRK10770 Location: 233515-234709 bp Feature: domain Description: PRK1 0770 Location: 23351 5-234709 bp Feature: gene Location: 234698-237487 bp Feature: domain Description: LptD Location: 234893-237473 bp Feature: domain Description: LptD Location: 234893-237473 bp Feature: gene Location: 237620-239332 bp Feature: RT Description: RVT_N Location: 237677-237920 bp Feature: RT Description: RVT_N Location: 237677-237920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237965-238601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237965-238601 bp Feature: domain Description: YkfC Location: 238811-238961 bp Feature: domain Description: YkfC Location: 23881 1 -238961 bp Feature: domain Description: HNH Note: nucleases Location: 239138-239276 bp Feature: domain Description: HNH Note: nucleases Location: 2391 38-239276 bp Feature: gene Location: 240604-241620 bp Feature: domain Description: COG3178 Location: 240607-241606 bp Feature: domain Description: COG31 78 Location: 240607-241 606 bp Feature: gene Location: 241617-242291 bp Feature: domain Description: NTP_transferase_like_1 Location: 241623-242262 bp Feature: domain Description: NTP_transferase_like_1 Location: 241 623-242262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LNIV02000009.1 Pseudomonas aeruginosa strain Hex1T contig_9, whole genome shotgun sequence (185330 bp)
Overview 1 RT 1: 97-4177 bp Neighborhood of RT #1 [97, 4177] RVT_N RVT-GII GIIM HNHc DEXHc_Snf DEXHc_Snf Feature: gene Location: 97-1800 bp Feature: RT Description: RVT_N Location: 154-397 bp Feature: RT Description: RVT_N Location: 154-397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442 -1078 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1363 bp Feature: domain Description: GIIM Note: maturase Location: 1132 -1363 bp Feature: domain Description: HNHc Note: nucleases Location: 1597-1744 bp Feature: domain Description: HNHc Note: nucleases Location: 1597-1744 bp Feature: gene Location: 2518-3723 bp Feature: domain Description: DEXHc_Snf Location: 2743-2998 bp Feature: domain Description: DEXHc_Snf Location: 2 743-2 998 bp Feature: domain Description: DEXHc_Snf Location: 3556-3700 bp Feature: domain Description: DEXHc_Snf Location: 3556-3700 bp Feature: gene Location: 3839-4177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)