myRT

myRT report for GCA_001469455.2_ASM146945v2

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Seq: LMTQ02000051.1 Streptomyces sp. AVP053U2 APS67_contig000051, whole genome shotgun sequence (50046 bp)
Overview 1 RT 1: 45798-48937 bp Neighborhood of RT #1 [45798, 48972] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 45798-46019 bp Feature: gene Location: 46799-47083 bp Ori: ODA69831.1 Gene: cas2b Feature: domain Description: Cas2_I_II_III Location: 46814-47045 bp Feature: domain Description: Cas2_I_II_III Location: 4681 4-47045 bp Feature: gene Location: 47095-48972 bp Ori: ODA69832.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 47305-47911 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 47305-4791 1 bp Feature: domain Description: Cas1_I-II-III Location: 47977-48937 bp Feature: domain Description: Cas1 _I-II-III Location: 47977-48937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: LMTQ02000033.1 Streptomyces sp. AVP053U2 APS67_contig000033, whole genome shotgun sequence (86953 bp)
Overview 1 RT 1: 444-3229 bp Neighborhood of RT #1 [444, 3229] RVT-GII GIIM PHA02517 Feature: gene Location: 444-1721 bp Ori: ODA70800.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1395-1620 bp Feature: domain Description: GIIM Note: maturase Location: 1395-162 0 bp Feature: gene Location: 2315-2473 bp Ori: ODA70801.1 Feature: domain Description: PHA02517 Location: 2318-2468 bp Feature: domain Description: PHA02 517 Location: 2 318-2 468 bp Feature: gene Location: 2675-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LMTQ02000050.1 Streptomyces sp. AVP053U2 APS67_contig000050, whole genome shotgun sequence (49660 bp)
Overview 1 RT 1: 247-3629 bp Neighborhood of RT #1 [247, 3655] RVT-GII InsE lacA Feature: gene Location: 247-657 bp Feature: gene Location: 680-883 bp Feature: gene Location: 1283-1750 bp Ori: ODA69836.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1607-1724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1607-1724 bp Feature: gene Location: 2316-2690 bp Ori: ODA69837.1 Feature: domain Description: InsE Location: 2328-2637 bp Feature: domain Description: InsE Location: 23 28-263 7 bp Feature: gene Location: 3053-3655 bp Ori: ODA69838.1 Gene: lacA Feature: domain Description: lacA Location: 3083-3629 bp Feature: domain Description: lacA Location: 3 083 -3 629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), lacA (TIGR01118)