myRT

myRT report for GCA_001471295.2_ASM147129v2

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Seq: LORO02000003.1 Enterococcus faecium strain FDAARGOS_138 unitig_1_quiver_quiver_pilon, whole genome shotgun sequence (246335 bp)
Overview 1 RT 1: 176799-181196 bp Neighborhood of RT #1 [176799, 181888] MazE RVT-GII HNHc VirB4 Feature: gene Location: 176799-177062 bp Ori: PNN20027.1 Feature: domain Description: MazE Location: 176820-177057 bp Feature: domain Description: MazE Location: 1 76820-1 77057 bp Feature: gene Location: 177121-177498 bp Feature: gene Location: 177629-179506 bp Ori: PNN20028.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177944-178682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77944-1 78682 bp Feature: domain Description: HNHc Note: nucleases Location: 179240-179393 bp Feature: domain Description: HNHc Note: nucleases Location: 1 79240-1 79393 bp Feature: gene Location: 179693-179926 bp Feature: gene Location: 180194-181888 bp Ori: PNN20030.1 Feature: domain Description: VirB4 Location: 180512-181196 bp Feature: domain Description: VirB4 Location: 1 8051 2-1 81 1 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MazE (COG2336), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: LORO02000002.1 Enterococcus faecium strain FDAARGOS_138 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence (2866364 bp)
Overview 1 RT 1: 366293-370242 bp 2 RT 2: 2562195-2566999 bp Neighborhood of RT #1 [366293, 370292] PinE Tra8 RVT-AbiP2 Rve CppA_C Neighborhood of RT #2 [2562195, 2567013] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 366293-366856 bp Ori: PNN22181.1 Feature: domain Description: PinE Location: 366305-366851 bp Feature: domain Description: PinE Location: 366305-366851 bp Feature: gene Location: 367499-368452 bp Ori: PNN22182.1 Feature: domain Description: Tra8 Location: 367502-368429 bp Feature: domain Description: Tra8 Location: 367502 -36842 9 bp Feature: gene Location: 368430-369365 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 368778-369243 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 368778-3692 43 bp Feature: gene Location: 369433-370119 bp Ori: PNN22183.1 Feature: domain Description: Rve Location: 369442-370090 bp Feature: domain Description: Rve Location: 369442 -370090 bp Feature: gene Location: 370176-370292 bp Feature: domain Description: CppA_C Location: 370179-370242 bp Feature: domain Description: CppA_C Location: 370179-3702 42 bp Feature: gene Location: 2562195-2563379 bp Ori: PNN24194.1 Feature: domain Description: HTH_XRE Location: 2562225-2562369 bp Feature: domain Description: HTH_XRE Location: 2 562 2 2 5-2 562 369 bp Feature: domain Description: Rol_Rep_N Location: 2562402-2562666 bp Feature: domain Description: Rol_Rep_N Location: 2 562 402 -2 562 666 bp Feature: domain Description: Rep_trans Location: 2562690-2563302 bp Feature: domain Description: Rep_trans Location: 2 562 690-2 563302 bp Feature: gene Location: 2563376-2563513 bp Ori: PNN24195.1 Feature: domain Description: DUF3789 Location: 2563403-2563496 bp Feature: domain Description: DUF3789 Location: 2 563403-2 563496 bp Feature: gene Location: 2564259-2566169 bp Ori: PNN24196.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2564592-2565330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 564592 -2 565330 bp Feature: domain Description: HNHc Note: nucleases Location: 2565885-2566050 bp Feature: domain Description: HNHc Note: nucleases Location: 2 565885-2 566050 bp Feature: gene Location: 2566273-2566497 bp Feature: gene Location: 2566510-2567013 bp Ori: PNN24198.1 Feature: domain Description: ArdA Location: 2566528-2566999 bp Feature: domain Description: ArdA Location: 2 56652 8-2 566999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Rve (COG3316), CppA_C (pfam14507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII
HNHc (smart00507), ArdA (pfam07275)

Seq: LORO02000001.1 Enterococcus faecium strain FDAARGOS_138 unitig_5_quiver_trim_quiver_pilon, whole genome shotgun sequence (67192 bp)
Overview 1 RT 1: 33321-39148 bp Neighborhood of RT #1 [33321, 39177] VirB4 RVT-GII HNHc CwlT_like Spr Feature: gene Location: 33321-34898 bp Feature: domain Description: VirB4 Location: 33645-34257 bp Feature: domain Description: VirB4 Location: 3 3 645-3 4257 bp Feature: gene Location: 35214-35447 bp Feature: gene Location: 35634-37511 bp Ori: PNN29392.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35949-36687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5949-3 6687 bp Feature: domain Description: HNHc Note: nucleases Location: 37245-37398 bp Feature: domain Description: HNHc Note: nucleases Location: 3 7245-3 73 98 bp Feature: gene Location: 37645-38019 bp Feature: gene Location: 38041-39177 bp Ori: PNN29393.1 Feature: domain Description: CwlT_like Location: 38287-38764 bp Feature: domain Description: CwlT_like Location: 3 8287-3 8764 bp Feature: domain Description: Spr Location: 38788-39148 bp Feature: domain Description: Spr Location: 3 8788-3 9148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), CwlT_like, Spr (COG0791)