myRT

myRT report for GCA_001471355.2_ASM147135v2

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Seq: LORM02000001.1 Pseudomonas aeruginosa strain FDAARGOS_154 scf7180000000010_quiver_pilon, whole genome shotgun sequence (6800405 bp)
Overview 1 RT 1: 3892818-3903124 bp 2 RT 2: 3919383-3927550 bp Neighborhood of RT #1 [3892818, 3903126] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [3919383, 3927564] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 3892818-3893939 bp Feature: domain Description: COG3177 Location: 3892836-3893928 bp Feature: domain Description: COG31 77 Location: 3892836-3893928 bp Feature: gene Location: 3894198-3894335 bp Feature: gene Location: 3894663-3896348 bp Feature: RT Description: RVT_N Location: 3894720-3894960 bp Feature: RT Description: RVT_N Location: 3894720-3894960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3895008-3895644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3895008-3895644 bp Feature: domain Description: GIIM Note: maturase Location: 3895698-3895929 bp Feature: domain Description: GIIM Note: maturase Location: 3895698-3895929 bp Feature: domain Description: HNH Note: nucleases Location: 3896181-3896319 bp Feature: domain Description: HNH Note: nucleases Location: 38961 81 -389631 9 bp Feature: gene Location: 3897429-3901166 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3897537-3898194 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3897537-38981 94 bp Feature: domain Description: PRK09776 Location: 3898407-3898878 bp Feature: domain Description: PRK09776 Location: 3898407-3898878 bp Feature: domain Description: PAS Location: 3898950-3899460 bp Feature: domain Description: PAS Location: 3898950-3899460 bp Feature: domain Description: PRK10060 Location: 3899469-3901116 bp Feature: domain Description: PRK1 0060 Location: 3899469-3901 1 1 6 bp Feature: gene Location: 3901273-3903126 bp Feature: domain Description: PRK05658 Location: 3901285-3903124 bp Feature: domain Description: PRK05658 Location: 3901 285-39031 24 bp Feature: gene Location: 3919383-3920675 bp Feature: domain Description: PRK10770 Location: 3919473-3920667 bp Feature: domain Description: PRK1 0770 Location: 391 9473-3920667 bp Feature: gene Location: 3920656-3923430 bp Feature: domain Description: LptD Location: 3920851-3923416 bp Feature: domain Description: LptD Location: 3920851 -392341 6 bp Feature: gene Location: 3923563-3925275 bp Feature: RT Description: RVT_N Location: 3923620-3923863 bp Feature: RT Description: RVT_N Location: 3923620-3923863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3923908-3924544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3923908-3924544 bp Feature: domain Description: YkfC Location: 3924754-3924904 bp Feature: domain Description: YkfC Location: 3924754-3924904 bp Feature: domain Description: HNH Note: nucleases Location: 3925081-3925219 bp Feature: domain Description: HNH Note: nucleases Location: 3925081 -392521 9 bp Feature: gene Location: 3925463-3925675 bp Feature: gene Location: 3926548-3927564 bp Feature: domain Description: COG3178 Location: 3926551-3927550 bp Feature: domain Description: COG31 78 Location: 3926551 -3927550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )