myRT

myRT report for GCA_001473245.1_ASM147324v1

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Seq: LJPB01000186.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_254, whole genome shotgun sequence (47064 bp)
Overview 1 RT 1: 1-4704 bp Neighborhood of RT #1 [1, 4757] RVT-GII GIIM Transposase_20 FlaA1 Feature: gene Location: 1-362 bp Feature: gene Location: 375-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456-1 1 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1311 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94-1 31 1 bp Feature: gene Location: 1850-2164 bp Feature: domain Description: Transposase_20 Location: 1967-2096 bp Feature: domain Description: Transposase_20 Location: 1 967-2096 bp Feature: gene Location: 2841-4757 bp Feature: domain Description: FlaA1 Location: 2895-4704 bp Feature: domain Description: FlaA1 Location: 2895-4704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), FlaA1 (COG1086), RVT-GII, GIIM (pfam08388)

Seq: LJPB01000126.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_20, whole genome shotgun sequence (55235 bp)
Overview 1 RT 1: 15698-21956 bp Neighborhood of RT #1 [15698, 22036] COG3177 RVT-Retrons arc_metj toxin_TenpN Feature: gene Location: 15698-16807 bp Feature: domain Description: COG3177 Location: 15743-16733 bp Feature: domain Description: COG3177 Location: 15743-16733 bp Feature: gene Location: 17334-18284 bp Feature: gene Location: 19513-20499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19516-20044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19516-2 0044 bp Feature: gene Location: 21183-21377 bp Feature: domain Description: arc_metj Location: 21243-21354 bp Feature: domain Description: arc_metj Location: 2 12 43-2 1354 bp Feature: gene Location: 21605-22036 bp Feature: domain Description: toxin_TenpN Location: 21608-21956 bp Feature: domain Description: toxin_TenpN Location: 2 1608-2 1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT-Retrons, arc_metj (LOAD_arc_metj), toxin_TenpN (cd17493)

Seq: LJPB01000268.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_82, whole genome shotgun sequence (22139 bp)
Overview 1 RT 1: 1598-5924 bp Neighborhood of RT #1 [1598, 5932] DDE_Tnp_Tn3 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3436 Feature: gene Location: 1598-1909 bp Feature: gene Location: 2113-2463 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2116-2389 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2116-23 89 bp Feature: gene Location: 2563-4068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2998-3691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2998-3 691 bp Feature: gene Location: 4440-5288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4443-5136 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4443 -513 6 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5157-5268 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5157-5268 bp Feature: gene Location: 5276-5932 bp Feature: domain Description: COG3436 Location: 5531-5924 bp Feature: domain Description: COG3 43 6 Location: 553 1-5924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase )