myRT

myRT report for GCA_001473595.1_Salmonella_enterica_CVM_43787_v1.0

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Seq: JYRE01000052.1 Salmonella enterica strain CVM 43787 43787_contig_52, whole genome shotgun sequence (57907 bp)
Overview 1 RT 1: 41705-46681 bp Neighborhood of RT #1 [41705, 46716] DinI RVT-AbiP2 Q P Feature: gene Location: 41705-42145 bp Ori: KTN63020.1 Feature: domain Description: DinI Location: 41960-42143 bp Feature: domain Description: DinI Location: 41 960-421 43 bp Feature: gene Location: 42226-42957 bp Feature: gene Location: 43010-44557 bp Ori: KTN63043.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 43427-43880 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 43427-43880 bp Feature: gene Location: 44951-45973 bp Ori: KTN63022.1 Feature: domain Description: Q Location: 44954-45965 bp Feature: domain Description: Q Location: 44954-45965 bp Feature: gene Location: 45970-46716 bp Ori: KTN63023.1 Feature: domain Description: P Location: 45976-46681 bp Feature: domain Description: P Location: 45976-46681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-AbiP2, Q (PHA02536), P (PHA02535)

Seq: JYRE01000050.1 Salmonella enterica strain CVM 43787 43787_contig_50, whole genome shotgun sequence (17218 bp)
Overview 1 RT 1: 14754-16973 bp Neighborhood of RT #1 [14754, 17218] COG3436 InsE RVT-GII GIIM Feature: gene Location: 14754-15101 bp Ori: KTN63516.1 Feature: domain Description: COG3436 Location: 14760-15096 bp Feature: domain Description: COG3436 Location: 14760-15096 bp Feature: gene Location: 15098-15502 bp Ori: KTN63517.1 Feature: domain Description: InsE Location: 15128-15464 bp Feature: domain Description: InsE Location: 1512 8-15464 bp Feature: gene Location: 16004-17218 bp Ori: KTN63518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16007-16700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16007-16700 bp Feature: domain Description: GIIM Note: maturase Location: 16775-16973 bp Feature: domain Description: GIIM Note: maturase Location: 16775-16973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: JYRE01000047.1 Salmonella enterica strain CVM 43787 43787_contig_47, whole genome shotgun sequence (1632 bp)
Overview 1 RT 1: 1-1632 bp Neighborhood of RT #1 [1, 1632] RVT-GII PHA02517 Feature: gene Location: 1-314 bp Ori: KTN64403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 921-1400 bp Ori: KTN64401.1 Feature: domain Description: PHA02517 Location: 981-1335 bp Feature: domain Description: PHA02517 Location: 981-13 3 5 bp Feature: gene Location: 1400-1632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)