myRT

myRT report for GCA_001473665.1_Salmonella_enterica_CVM_43799_v1.0

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Seq: JYRQ01000024.1 Salmonella enterica strain CVM 43799 43799_contig_24, whole genome shotgun sequence (38642 bp)
Overview 1 RT 1: 15131-19379 bp Neighborhood of RT #1 [15131, 19381] DUF1380 RVT_N RVT-GII GIIM HNHc PRK13732 Feature: gene Location: 15131-15553 bp Feature: domain Description: DUF1380 Location: 15134-15428 bp Feature: domain Description: DUF1 380 Location: 1 51 34-1 5428 bp Feature: gene Location: 15550-15741 bp Feature: gene Location: 16019-17686 bp Feature: RT Description: RVT_N Location: 16067-16304 bp Feature: RT Description: RVT_N Location: 1 6067-1 6304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16355-16997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6355-1 6997 bp Feature: domain Description: GIIM Note: maturase Location: 17048-17282 bp Feature: domain Description: GIIM Note: maturase Location: 1 7048-1 7282 bp Feature: domain Description: HNHc Note: nucleases Location: 17492-17651 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7492-1 7651 bp Feature: gene Location: 18260-18733 bp Feature: gene Location: 18854-19381 bp Feature: domain Description: PRK13732 Location: 18857-19379 bp Feature: domain Description: PRK1 3732 Location: 1 8857-1 9379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional)

Seq: JYRQ01000031.1 Salmonella enterica strain CVM 43799 43799_contig_31, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 43815-48629 bp Neighborhood of RT #1 [43815, 48629] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 43815-44774 bp Feature: domain Description: PRK10216 Location: 43818-44769 bp Feature: domain Description: PRK102 16 Location: 43818-44769 bp Feature: gene Location: 44743-45930 bp Feature: domain Description: PRK10473 Location: 44746-45922 bp Feature: domain Description: PRK10473 Location: 44746-4592 2 bp Feature: gene Location: 46732-47667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-47428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-4742 8 bp Feature: gene Location: 47667-48629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons