myRT

myRT report for GCA_001473785.1_Salmonella_enterica_CVM_43822_v1.0

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Seq: JYSN01000003.1 Salmonella enterica strain CVM 43822 43822_contig_3, whole genome shotgun sequence (48741 bp)
Overview 1 RT 1: 43815-48629 bp Neighborhood of RT #1 [43815, 48629] PRK10216 PRK10473 RVT-Retrons Feature: gene Location: 43815-44774 bp Feature: domain Description: PRK10216 Location: 43818-44769 bp Feature: domain Description: PRK1 021 6 Location: 4381 8-44769 bp Feature: gene Location: 44743-45930 bp Feature: domain Description: PRK10473 Location: 44746-45922 bp Feature: domain Description: PRK1 0473 Location: 44746-45922 bp Feature: gene Location: 46732-47667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-47428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46843-47428 bp Feature: gene Location: 47667-48629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons

Seq: JYSN01000024.1 Salmonella enterica strain CVM 43822 43822_contig_24, whole genome shotgun sequence (4047 bp)
Overview 1 RT 1: 579-3099 bp Neighborhood of RT #1 [579, 3134] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 579-1001 bp Feature: domain Description: DUF1380 Location: 582-876 bp Feature: domain Description: DUF1380 Location: 582 -876 bp Feature: gene Location: 998-1189 bp Feature: gene Location: 1467-3134 bp Feature: RT Description: RVT_N Location: 1515-1752 bp Feature: RT Description: RVT_N Location: 1515-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1803-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1803-2 445 bp Feature: domain Description: GIIM Note: maturase Location: 2496-2730 bp Feature: domain Description: GIIM Note: maturase Location: 2 496-2 730 bp Feature: domain Description: HNHc Note: nucleases Location: 2940-3099 bp Feature: domain Description: HNHc Note: nucleases Location: 2 940-3099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)